Do not assume read depth is present in pipeline checks

Signed-off-by: Don Naegely <naegelyd@gmail.com>
Use __name__ over __file__ in queue logger
Move kwargs definition inside try block

Signed-off-by: Don Naegely <naegelyd@gmail.com>
Update delete-samples command to take multiple ids

The ids are simply arguments after the command, each separated by a space.

Signed-off-by: Don Naegely <naegelyd@gmail.com>
Avoid extra query during sample delete pre-check

Signed-off-by: Don Naegely <naegelyd@gmail.com>
Query against sample when generating invalid id list

Signed-off-by: Don Naegely <naegelyd@gmail.com>
Merge pull request #262 from cbmi/issue-261

Update delete-samples command to take multiple ids
Hide cohort popover tab changes or modal is closed

Signed-off-by: Don Naegely <naegelyd@gmail.com>
Note required CBMi SnpEff annotations when loading

This updates the README to include a note warning the user that any VCFs being loaded into Varify currently must be annotated using the CBMi SnpEff fork(https://github.com/CBMi-BiG/snpEff) to run through the loader.

Signed-off-by: Don Naegely <naegelyd@gmail.com>
Require Django >= 1.4.11(security release)

Signed-off-by: Don Naegely <naegelyd@gmail.com>
Merge pull request #266 from cbmi/issue-264

Hide cohort popover tab changes or modal is closed
 Automatically start rqworkers, updated tests

Signed-off-by: Sheik Hassan <solergiga@yahoo.com>
Merge pull request #265 from muslimgiga/issue-260

Add option for starting workers during samples queue command
Update postgres versions in puppet_modules

Fixes #245. The yum repo for postgres no longer contains the original
packages that the Vagrant VM referenced (via dependencies defined by
puppet). This updates them to use the 9.2.8 versions of lib, devel, and
server.

Signed-off-by: Michael Italia <ITALIAM@email.chop.edu>
Merge pull request #270 from cbmi/issue-245

Update postgres versions in puppet_modules
Merge branch 'master' into vcf_export_dev