Upgraded to Hadoop-BAM 0.6.2/Picard 1.107.
vcf parsing for annotations
Merge pull request #173 from hammerlab/vcfanno

Parse annotations out of vcf files
Merge pull request #178 from fnothaft/hadoop-bam-0.6.2

Upgraded to Hadoop-BAM 0.6.2/Picard 1.107.