Added isIterating property on atomList so we can add atoms while
iterating. This is convenient for adding copies etc.
Added addVelocity and setVelocity with vector<double> as argument.
Added applyPeriodicBoundaryConditions function in atommanager.cpp.
Fixed (hopefully) usc potential. Still trouble with looping.
Added SiO4 molecule to generator.cpp.
Added addAtom with position as argument in system.cpp
Nothing.
Replaced cout on std vector to matlab syntax.
Working on iterator. It iterates better than before by also adding
ghosts to other ghosts neighbor lists.