RNA_Seq data analysis using Bowtie and cufflink 

Using Bowtie and cufflink for Streptococcus pneumoniae d39  for control and drug treated samples. 
Data source : Slager, J., Kjos, M., Attaiech, L., & Veening, J. (2014). Antibiotic-Induced Replication Stress Triggers Bacterial Competence by Increasing Gene Dosage near the Origin. Cell, 157(2), 395-406 .   j.cell.2014.01.068