compile version
Merge branch 'master' of https://github.com/zfalls/Avogadro

Conflicts:
	CMakeLists.txt
	INSTALL
	README
	avogadro/src/aboutdialog.cpp
	avogadro/src/aboutdialog.h
	avogadro/src/addenginedialog.cpp
	avogadro/src/addenginedialog.h
	avogadro/src/application.cpp
	avogadro/src/application.h
	avogadro/src/config.h.in
	avogadro/src/detachedview.cpp
	avogadro/src/detachedview.h
	avogadro/src/editcommands.cpp
	avogadro/src/editcommands.h
	avogadro/src/enginecolorswidget.cpp
	avogadro/src/enginecolorswidget.h
	avogadro/src/engineitemdelegate.cpp
	avogadro/src/engineitemdelegate.h
	avogadro/src/engineitemmodel.cpp
	avogadro/src/engineitemmodel.h
	avogadro/src/enginelistview.cpp
	avogadro/src/enginelistview.h
	avogadro/src/engineprimitiveswidget.cpp
	avogadro/src/engineprimitiveswidget.h
	avogadro/src/engineviewwidget.cpp
	avogadro/src/engineviewwidget.h
	avogadro/src/flattabwidget.cpp
	avogadro/src/flattabwidget.h
	avogadro/src/glgraphicsview.cpp
	avogadro/src/glgraphicsview.h
	avogadro/src/importdialog.cpp
	avogadro/src/importdialog.h
	avogadro/src/mac/MacOSXBundleInfo.plist.in
	avogadro/src/macchempasteboard.cpp.disabled
	avogadro/src/macchempasteboard.h.disabled
	avogadro/src/main.cpp
	avogadro/src/mainwindow.cpp
	avogadro/src/mainwindow.h
	avogadro/src/pluginitemmodel.cpp
	avogadro/src/pluginitemmodel.h
	avogadro/src/pluginlistview.cpp
	avogadro/src/pluginlistview.h
	avogadro/src/pluginsettings.cpp
	avogadro/src/pluginsettings.h
	avogadro/src/primitiveitemmodel.cpp
	avogadro/src/primitiveitemmodel.h
	avogadro/src/primitivetreeview.cpp
	avogadro/src/primitivetreeview.h
	avogadro/src/projectdelegates/atomdelegate.cpp
	avogadro/src/projectdelegates/atomdelegate.h
	avogadro/src/projectdelegates/bonddelegate.cpp
	avogadro/src/projectdelegates/bonddelegate.h
	avogadro/src/projectdelegates/labeldelegate.cpp
	avogadro/src/projectdelegates/labeldelegate.h
	avogadro/src/projectdelegates/moleculedelegate.cpp
	avogadro/src/projectdelegates/moleculedelegate.h
	avogadro/src/projectdelegates/residuedelegate.cpp
	avogadro/src/projectdelegates/residuedelegate.h
	avogadro/src/projectdelegates/selectiondelegate.cpp
	avogadro/src/projectdelegates/selectiondelegate.h
	avogadro/src/projecttreeeditor.cpp
	avogadro/src/projecttreeitem.cpp
	avogadro/src/projecttreeitem.h
	avogadro/src/projecttreemodel.cpp
	avogadro/src/projecttreemodel.h
	avogadro/src/projecttreemodeldelegate.cpp
	avogadro/src/projecttreemodeldelegate.h
	avogadro/src/savedialog.cpp
	avogadro/src/savedialog.h
	avogadro/src/settingsdialog.cpp
	avogadro/src/settingsdialog.h
	avogadro/src/updatecheck.cpp
	avogadro/src/updatecheck.h
	avogadro/src/updatedialog.cpp
	avogadro/src/updatedialog.h
	avopkg.in
	cmake/modules/AvoCPackOptions.cmake.in
	cmake/modules/AvogadroConfig.cmake.in
	cmake/modules/AvogadroConfigVersion.cmake.in
	cmake/modules/FindEigen2.cmake
	doc/avogadro.1
	doc/avopkg.1
	doc/index.docbook
	doc/mainpage.dox
	i18n/avogadro/af.po
	i18n/avogadro/ar.po
	i18n/avogadro/avogadro.pot
	i18n/avogadro/bg.po
	i18n/avogadro/ca.po
	i18n/avogadro/ca@valencia.po
	i18n/avogadro/cs.po
	i18n/avogadro/da.po
	i18n/avogadro/de.po
	i18n/avogadro/el.po
	i18n/avogadro/en_AU.po
	i18n/avogadro/en_CA.po
	i18n/avogadro/en_GB.po
	i18n/avogadro/es.po
	i18n/avogadro/et.po
	i18n/avogadro/eu.po
	i18n/avogadro/fi.po
	i18n/avogadro/fr.po
	i18n/avogadro/gl.po
	i18n/avogadro/he.po
	i18n/avogadro/hi.po
	i18n/avogadro/hr.po
	i18n/avogadro/hu.po
	i18n/avogadro/id.po
	i18n/avogadro/it.po
	i18n/avogadro/ja.po
	i18n/avogadro/kn.po
	i18n/avogadro/ko.po
	i18n/avogadro/ms.po
	i18n/avogadro/nb.po
	i18n/avogadro/nl.po
	i18n/avogadro/oc.po
	i18n/avogadro/pl.po
	i18n/avogadro/pt.po
	i18n/avogadro/pt_BR.po
	i18n/avogadro/ru.po
	i18n/avogadro/sk.po
	i18n/avogadro/sl.po
	i18n/avogadro/sq.po
	i18n/avogadro/sr.po
	i18n/avogadro/sv.po
	i18n/avogadro/ta.po
	i18n/avogadro/th.po
	i18n/avogadro/tr.po
	i18n/avogadro/ug.po
	i18n/avogadro/uk.po
	i18n/avogadro/vi.po
	i18n/avogadro/zh_CN.po
	i18n/avogadro/zh_TW.po
	i18n/libavogadro/ar.po
	i18n/libavogadro/bg.po
	i18n/libavogadro/bs.po
	i18n/libavogadro/ca.po
	i18n/libavogadro/ca@valencia.po
	i18n/libavogadro/cs.po
	i18n/libavogadro/da.po
	i18n/libavogadro/de.po
	i18n/libavogadro/el.po
	i18n/libavogadro/en_AU.po
	i18n/libavogadro/en_CA.po
	i18n/libavogadro/en_GB.po
	i18n/libavogadro/es.po
	i18n/libavogadro/et.po
	i18n/libavogadro/eu.po
	i18n/libavogadro/fi.po
	i18n/libavogadro/fr.po
	i18n/libavogadro/gl.po
	i18n/libavogadro/he.po
	i18n/libavogadro/hi.po
	i18n/libavogadro/hu.po
	i18n/libavogadro/id.po
	i18n/libavogadro/it.po
	i18n/libavogadro/ja.po
	i18n/libavogadro/kn.po
	i18n/libavogadro/ko.po
	i18n/libavogadro/libavogadro.pot
	i18n/libavogadro/ms.po
	i18n/libavogadro/nb.po
	i18n/libavogadro/nl.po
	i18n/libavogadro/oc.po
	i18n/libavogadro/pl.po
	i18n/libavogadro/pt.po
	i18n/libavogadro/pt_BR.po
	i18n/libavogadro/ru.po
	i18n/libavogadro/sk.po
	i18n/libavogadro/sl.po
	i18n/libavogadro/sq.po
	i18n/libavogadro/sr.po
	i18n/libavogadro/sv.po
	i18n/libavogadro/tr.po
	i18n/libavogadro/ug.po
	i18n/libavogadro/uk.po
	i18n/libavogadro/vi.po
	i18n/libavogadro/zh_CN.po
	i18n/libavogadro/zh_TW.po
	libavogadro/examples/c++/CMakeLists.txt
	libavogadro/examples/c++/templateextension.cpp
	libavogadro/examples/c++/templateextension.h
	libavogadro/examples/c++/templateextension.pro
	libavogadro/examples/thirdPartyExtensions/01-HelloWorld/CMakeLists.txt
	libavogadro/examples/thirdPartyExtensions/01-HelloWorld/helloworldextension.cpp
	libavogadro/examples/thirdPartyExtensions/01-HelloWorld/helloworldextension.h
	libavogadro/examples/thirdPartyExtensions/02-DynamicDisplay/CMakeLists.txt
	libavogadro/examples/thirdPartyExtensions/02-DynamicDisplay/dynamicdisplayextension.cpp
	libavogadro/examples/thirdPartyExtensions/02-DynamicDisplay/dynamicdisplayextension.h
	libavogadro/examples/thirdPartyExtensions/03-ViewPlane/CMakeLists.txt
	libavogadro/examples/thirdPartyExtensions/03-ViewPlane/viewplaneextension.cpp
	libavogadro/examples/thirdPartyExtensions/03-ViewPlane/viewplaneextension.h
	libavogadro/examples/thirdPartyExtensions/04-RotateSelection/CMakeLists.txt
	libavogadro/examples/thirdPartyExtensions/04-RotateSelection/rotateselectionextension.cpp
	libavogadro/examples/thirdPartyExtensions/04-RotateSelection/rotateselectionextension.h
	libavogadro/examples/thirdPartyExtensions/05-ConformerPlot/CMakeLists.txt
	libavogadro/examples/thirdPartyExtensions/05-ConformerPlot/conformerplotextension.cpp
	libavogadro/examples/thirdPartyExtensions/05-ConformerPlot/conformerplotextension.h
	libavogadro/examples/thirdPartyExtensions/toc.dox
	libavogadro/src/animation.cpp
	libavogadro/src/animation.h
	libavogadro/src/atom.cpp
	libavogadro/src/atom.h
	libavogadro/src/bond.cpp
	libavogadro/src/bond.h
	libavogadro/src/camera.cpp
	libavogadro/src/camera.h
	libavogadro/src/color.cpp
	libavogadro/src/color.h
	libavogadro/src/color3f.h
	libavogadro/src/colorbutton.cpp
	libavogadro/src/colorbutton.h
	libavogadro/src/colors/atomindexcolor.cpp
	libavogadro/src/colors/atomindexcolor.h
	libavogadro/src/colors/chargecolor.cpp
	libavogadro/src/colors/chargecolor.h
	libavogadro/src/colors/customcolor.cpp
	libavogadro/src/colors/customcolor.h
	libavogadro/src/colors/distancecolor.cpp
	libavogadro/src/colors/distancecolor.h
	libavogadro/src/colors/elementcolor.cpp
	libavogadro/src/colors/elementcolor.h
	libavogadro/src/colors/residuecolor.cpp
	libavogadro/src/colors/residuecolor.h
	libavogadro/src/colors/smartscolor.cpp
	libavogadro/src/colors/smartscolor.h
	libavogadro/src/config.h.in
	libavogadro/src/cube.cpp
	libavogadro/src/cube.h
	libavogadro/src/cylinder_p.cpp
	libavogadro/src/cylinder_p.h
	libavogadro/src/dockextension.cpp
	libavogadro/src/dockextension.h
	libavogadro/src/dockwidget.cpp
	libavogadro/src/dockwidget.h
	libavogadro/src/elementdetail_p.cpp
	libavogadro/src/elementdetail_p.h
	libavogadro/src/elementitem_p.cpp
	libavogadro/src/elementitem_p.h
	libavogadro/src/elementtranslator.cpp
	libavogadro/src/elementtranslator.h
	libavogadro/src/engine.cpp
	libavogadro/src/engine.h
	libavogadro/src/engines/axesengine.cpp
	libavogadro/src/engines/axesengine.h
	libavogadro/src/engines/bsdyengine.cpp
	libavogadro/src/engines/bsdyengine.h
	libavogadro/src/engines/cartoonengine.cpp
	libavogadro/src/engines/cartoonengine.h
	libavogadro/src/engines/cartoonmeshgenerator.cpp
	libavogadro/src/engines/cartoonmeshgenerator.h
	libavogadro/src/engines/dipoleengine.cpp
	libavogadro/src/engines/dipoleengine.h
	libavogadro/src/engines/forceengine.cpp
	libavogadro/src/engines/forceengine.h
	libavogadro/src/engines/hbondengine.cpp
	libavogadro/src/engines/hbondengine.h
	libavogadro/src/engines/labelengine.cpp
	libavogadro/src/engines/labelengine.h
	libavogadro/src/engines/polygonengine.cpp
	libavogadro/src/engines/polygonengine.h
	libavogadro/src/engines/qtaimengine.cpp
	libavogadro/src/engines/qtaimengine.h
	libavogadro/src/engines/ribbonengine.cpp
	libavogadro/src/engines/ribbonengine.h
	libavogadro/src/engines/ringengine.cpp
	libavogadro/src/engines/ringengine.h
	libavogadro/src/engines/simplewireengine.cpp
	libavogadro/src/engines/simplewireengine.h
	libavogadro/src/engines/sphereengine.cpp
	libavogadro/src/engines/sphereengine.h
	libavogadro/src/engines/stickengine.cpp
	libavogadro/src/engines/stickengine.h
	libavogadro/src/engines/surfaceengine.cpp
	libavogadro/src/engines/surfaceengine.h
	libavogadro/src/engines/wireengine.cpp
	libavogadro/src/engines/wireengine.h
	libavogadro/src/extension.cpp
	libavogadro/src/extension.h
	libavogadro/src/extensions/CMakeLists.txt
	libavogadro/src/extensions/animationdialog.cpp
	libavogadro/src/extensions/animationdialog.h
	libavogadro/src/extensions/animationextension.cpp
	libavogadro/src/extensions/animationextension.h
	libavogadro/src/extensions/cartesianextension.cpp
	libavogadro/src/extensions/cartesianextension.h
	libavogadro/src/extensions/conformersearchdialog.cpp
	libavogadro/src/extensions/conformersearchdialog.h
	libavogadro/src/extensions/constraintsdialog.cpp
	libavogadro/src/extensions/constraintsdialog.h
	libavogadro/src/extensions/constraintsmodel.cpp
	libavogadro/src/extensions/constraintsmodel.h
	libavogadro/src/extensions/crystallography/avospglib.cpp
	libavogadro/src/extensions/crystallography/avospglib.h
	libavogadro/src/extensions/crystallography/ceundo.cpp
	libavogadro/src/extensions/crystallography/ceundo.h
	libavogadro/src/extensions/crystallography/crystallographyextension.cpp
	libavogadro/src/extensions/crystallography/crystallographyextension.h
	libavogadro/src/extensions/crystallography/crystalpastedialog.cpp
	libavogadro/src/extensions/crystallography/crystalpastedialog.h
	libavogadro/src/extensions/crystallography/spglib/CMakeLists.txt
	libavogadro/src/extensions/crystallography/spglib/COPYING
	libavogadro/src/extensions/crystallography/spglib/cell.c
	libavogadro/src/extensions/crystallography/spglib/hall_symbol.c
	libavogadro/src/extensions/crystallography/spglib/hall_symbol.h
	libavogadro/src/extensions/crystallography/spglib/lattice.c
	libavogadro/src/extensions/crystallography/spglib/lattice.h
	libavogadro/src/extensions/crystallography/spglib/mathfunc.c
	libavogadro/src/extensions/crystallography/spglib/mathfunc.h
	libavogadro/src/extensions/crystallography/spglib/pointgroup.c
	libavogadro/src/extensions/crystallography/spglib/pointgroup.h
	libavogadro/src/extensions/crystallography/spglib/primitive.c
	libavogadro/src/extensions/crystallography/spglib/primitive.h
	libavogadro/src/extensions/crystallography/spglib/refinement.c
	libavogadro/src/extensions/crystallography/spglib/refinement.h
	libavogadro/src/extensions/crystallography/spglib/spacegroup.c
	libavogadro/src/extensions/crystallography/spglib/spg_database.c
	libavogadro/src/extensions/crystallography/spglib/spglib.c
	libavogadro/src/extensions/crystallography/spglib/spglib.h
	libavogadro/src/extensions/crystallography/spglib/symmetry.c
	libavogadro/src/extensions/crystallography/spglib/symmetry.h
	libavogadro/src/extensions/crystallography/stablecomparison.h
	libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp
	libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h
	libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp
	libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h
	libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp
	libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h
	libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp
	libavogadro/src/extensions/crystallography/ui/cematrixeditor.h
	libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp
	libavogadro/src/extensions/crystallography/ui/ceparametereditor.h
	libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp
	libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h
	libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp
	libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h
	libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp
	libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h
	libavogadro/src/extensions/fileimportextension.cpp
	libavogadro/src/extensions/fileimportextension.h
	libavogadro/src/extensions/forcefielddialog.cpp
	libavogadro/src/extensions/forcefielddialog.h
	libavogadro/src/extensions/forcefieldextension.cpp
	libavogadro/src/extensions/forcefieldextension.h
	libavogadro/src/extensions/gl2ps/gl2ps.c
	libavogadro/src/extensions/gl2ps/gl2ps.h
	libavogadro/src/extensions/gl2ps/gl2ps.pdf
	libavogadro/src/extensions/gl2ps/gl2psTest.c
	libavogadro/src/extensions/gl2ps/gl2psTestSimple.c
	libavogadro/src/extensions/gl2psextension.cpp
	libavogadro/src/extensions/gl2psextension.h
	libavogadro/src/extensions/h2methylextension.cpp
	libavogadro/src/extensions/h2methylextension.h
	libavogadro/src/extensions/highlighter.cpp
	libavogadro/src/extensions/highlighter.h
	libavogadro/src/extensions/hydrogensextension.cpp
	libavogadro/src/extensions/hydrogensextension.h
	libavogadro/src/extensions/insertcommand.cpp
	libavogadro/src/extensions/insertcommand.h
	libavogadro/src/extensions/insertdnaextension.cpp
	libavogadro/src/extensions/insertdnaextension.h
	libavogadro/src/extensions/insertfragmentdialog.cpp
	libavogadro/src/extensions/insertfragmentdialog.h
	libavogadro/src/extensions/insertfragmentextension.cpp
	libavogadro/src/extensions/insertfragmentextension.h
	libavogadro/src/extensions/insertpeptideextension.cpp
	libavogadro/src/extensions/insertpeptideextension.h
	libavogadro/src/extensions/invertchiralextension.cpp
	libavogadro/src/extensions/invertchiralextension.h
	libavogadro/src/extensions/molecularpropextension.cpp
	libavogadro/src/extensions/molecularpropextension.h
	libavogadro/src/extensions/networkfetchextension.cpp
	libavogadro/src/extensions/networkfetchextension.h
	libavogadro/src/extensions/povpainter.cpp
	libavogadro/src/extensions/povpainter.h
	libavogadro/src/extensions/povraydialog.cpp
	libavogadro/src/extensions/povraydialog.h
	libavogadro/src/extensions/povrayextension.cpp
	libavogadro/src/extensions/povrayextension.h
	libavogadro/src/extensions/propextension.cpp
	libavogadro/src/extensions/propextension.h
	libavogadro/src/extensions/propmodel.cpp
	libavogadro/src/extensions/propmodel.h
	libavogadro/src/extensions/pythonterminal.cpp
	libavogadro/src/extensions/pythonterminal.h
	libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp
	libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h
	libavogadro/src/extensions/qtaim/qtaimcubature.cpp
	libavogadro/src/extensions/qtaim/qtaimcubature.h
	libavogadro/src/extensions/qtaim/qtaimextension.cpp
	libavogadro/src/extensions/qtaim/qtaimextension.h
	libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp
	libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.h
	libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp
	libavogadro/src/extensions/qtaim/qtaimmathutilities.h
	libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp
	libavogadro/src/extensions/qtaim/qtaimodeintegrator.h
	libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp
	libavogadro/src/extensions/qtaim/qtaimwavefunction.h
	libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp
	libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp
	libavogadro/src/extensions/quantuminput/abinitinputdialog.h
	libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp
	libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h
	libavogadro/src/extensions/quantuminput/gamessextension.cpp
	libavogadro/src/extensions/quantuminput/gamessextension.h
	libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp
	libavogadro/src/extensions/quantuminput/gamesshighlighter.h
	libavogadro/src/extensions/quantuminput/gamessinputdata.cpp
	libavogadro/src/extensions/quantuminput/gamessinputdata.h
	libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp
	libavogadro/src/extensions/quantuminput/gamessinputdialog.h
	libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp
	libavogadro/src/extensions/quantuminput/gamessukinputdialog.h
	libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp
	libavogadro/src/extensions/quantuminput/gaussianinputdialog.h
	libavogadro/src/extensions/quantuminput/inputdialog.cpp
	libavogadro/src/extensions/quantuminput/inputdialog.h
	libavogadro/src/extensions/quantuminput/inputfileextension.cpp
	libavogadro/src/extensions/quantuminput/inputfileextension.h
	libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp
	libavogadro/src/extensions/quantuminput/lammpsinputdialog.h
	libavogadro/src/extensions/quantuminput/molproinputdialog.cpp
	libavogadro/src/extensions/quantuminput/molproinputdialog.h
	libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp
	libavogadro/src/extensions/quantuminput/mopacinputdialog.h
	libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp
	libavogadro/src/extensions/quantuminput/nwcheminputdialog.h
	libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp
	libavogadro/src/extensions/quantuminput/psi4inputdialog.h
	libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp
	libavogadro/src/extensions/quantuminput/qcheminputdialog.h
	libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp
	libavogadro/src/extensions/quantuminput/teracheminputdialog.h
	libavogadro/src/extensions/selectextension.cpp
	libavogadro/src/extensions/selectextension.h
	libavogadro/src/extensions/shaderextension.cpp
	libavogadro/src/extensions/shaderextension.h
	libavogadro/src/extensions/sortfiltertreeproxymodel.cpp
	libavogadro/src/extensions/sortfiltertreeproxymodel.h
	libavogadro/src/extensions/spectra/abstract_ir.cpp
	libavogadro/src/extensions/spectra/abstract_ir.h
	libavogadro/src/extensions/spectra/cd.cpp
	libavogadro/src/extensions/spectra/cd.h
	libavogadro/src/extensions/spectra/dos.cpp
	libavogadro/src/extensions/spectra/dos.h
	libavogadro/src/extensions/spectra/ir.cpp
	libavogadro/src/extensions/spectra/ir.h
	libavogadro/src/extensions/spectra/nmr.cpp
	libavogadro/src/extensions/spectra/nmr.h
	libavogadro/src/extensions/spectra/raman.cpp
	libavogadro/src/extensions/spectra/raman.h
	libavogadro/src/extensions/spectra/spectradialog.cpp
	libavogadro/src/extensions/spectra/spectradialog.h
	libavogadro/src/extensions/spectra/spectraextension.cpp
	libavogadro/src/extensions/spectra/spectraextension.h
	libavogadro/src/extensions/spectra/spectratype.cpp
	libavogadro/src/extensions/spectra/spectratype.h
	libavogadro/src/extensions/spectra/uv.cpp
	libavogadro/src/extensions/spectra/uv.h
	libavogadro/src/extensions/spectra/vibrationextension.cpp
	libavogadro/src/extensions/spectra/vibrationextension.h
	libavogadro/src/extensions/spectra/vibrationwidget.cpp
	libavogadro/src/extensions/spectra/vibrationwidget.h
	libavogadro/src/extensions/supercelldialog.cpp
	libavogadro/src/extensions/supercelldialog.h
	libavogadro/src/extensions/supercellextension.cpp
	libavogadro/src/extensions/supercellextension.h
	libavogadro/src/extensions/surfaces/approxmath.h
	libavogadro/src/extensions/surfaces/htmldelegate.cpp
	libavogadro/src/extensions/surfaces/htmldelegate.h
	libavogadro/src/extensions/surfaces/molpro.cpp
	libavogadro/src/extensions/surfaces/molpro.h
	libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp
	libavogadro/src/extensions/surfaces/openqube/gamessus.cpp
	libavogadro/src/extensions/surfaces/openqube/molden.cpp
	libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp
	libavogadro/src/extensions/surfaces/openqube/slaterset.cpp
	libavogadro/src/extensions/surfaces/orbitalextension.cpp
	libavogadro/src/extensions/surfaces/orbitalextension.h
	libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp
	libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h
	libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp
	libavogadro/src/extensions/surfaces/orbitaltablemodel.h
	libavogadro/src/extensions/surfaces/orbitalwidget.cpp
	libavogadro/src/extensions/surfaces/orbitalwidget.h
	libavogadro/src/extensions/surfaces/surfacedialog.cpp
	libavogadro/src/extensions/surfaces/surfacedialog.h
	libavogadro/src/extensions/surfaces/surfaceextension.cpp
	libavogadro/src/extensions/surfaces/surfaceextension.h
	libavogadro/src/extensions/surfaces/vdwsurface.cpp
	libavogadro/src/extensions/surfaces/vdwsurface.h
	libavogadro/src/extensions/swcntbuilder/avotubegen.cpp
	libavogadro/src/extensions/swcntbuilder/avotubegen.h
	libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp
	libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h
	libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp
	libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h
	libavogadro/src/extensions/swcntbuilder/tubegen/CMakeLists.txt
	libavogadro/src/extensions/trajvideomaker.cpp
	libavogadro/src/extensions/trajvideomaker.h
	libavogadro/src/extensions/wiitrackextension.cpp
	libavogadro/src/extensions/wiitrackextension.h
	libavogadro/src/fragment.cpp
	libavogadro/src/fragment.h
	libavogadro/src/glhit.cpp
	libavogadro/src/glhit.h
	libavogadro/src/global.cpp
	libavogadro/src/global.h
	libavogadro/src/glpainter_p.cpp
	libavogadro/src/glpainter_p.h
	libavogadro/src/glwidget.cpp
	libavogadro/src/glwidget.h
	libavogadro/src/idlist.cpp
	libavogadro/src/idlist.h
	libavogadro/src/mesh.cpp
	libavogadro/src/mesh.h
	libavogadro/src/meshgenerator.cpp
	libavogadro/src/meshgenerator.h
	libavogadro/src/molecule.cpp
	libavogadro/src/molecule.h
	libavogadro/src/moleculefile.cpp
	libavogadro/src/moleculefile.h
	libavogadro/src/navigate.cpp
	libavogadro/src/navigate.h
	libavogadro/src/neighborlist.cpp
	libavogadro/src/neighborlist.h
	libavogadro/src/obeigenconv.h
	libavogadro/src/painter.cpp
	libavogadro/src/painter.h
	libavogadro/src/painterdevice.h
	libavogadro/src/periodictablescene_p.cpp
	libavogadro/src/periodictablescene_p.h
	libavogadro/src/periodictableview.cpp
	libavogadro/src/periodictableview.h
	libavogadro/src/plotaxis.cpp
	libavogadro/src/plotaxis.h
	libavogadro/src/plotobject.cpp
	libavogadro/src/plotobject.h
	libavogadro/src/plotpoint.cpp
	libavogadro/src/plotpoint.h
	libavogadro/src/plotwidget.cpp
	libavogadro/src/plotwidget.h
	libavogadro/src/plugin.cpp
	libavogadro/src/plugin.h
	libavogadro/src/pluginmanager.cpp
	libavogadro/src/pluginmanager.h
	libavogadro/src/primitive.cpp
	libavogadro/src/primitive.h
	libavogadro/src/primitivelist.cpp
	libavogadro/src/primitivelist.h
	libavogadro/src/protein.cpp
	libavogadro/src/protein.h
	libavogadro/src/pythonengine_p.cpp
	libavogadro/src/pythonengine_p.h
	libavogadro/src/pythonerror.cpp
	libavogadro/src/pythonerror.h
	libavogadro/src/pythonextension_p.cpp
	libavogadro/src/pythonextension_p.h
	libavogadro/src/pythoninterpreter.cpp
	libavogadro/src/pythoninterpreter.h
	libavogadro/src/pythonscript.cpp
	libavogadro/src/pythonscript.h
	libavogadro/src/pythonthread_p.h
	libavogadro/src/pythontool_p.cpp
	libavogadro/src/pythontool_p.h
	libavogadro/src/readfilethread_p.cpp
	libavogadro/src/readfilethread_p.h
	libavogadro/src/residue.cpp
	libavogadro/src/residue.h
	libavogadro/src/sphere_p.cpp
	libavogadro/src/sphere_p.h
	libavogadro/src/surfacemeshgenerator.h
	libavogadro/src/textmatrixeditor.cpp
	libavogadro/src/textmatrixeditor.h
	libavogadro/src/textrenderer_p.cpp
	libavogadro/src/textrenderer_p.h
	libavogadro/src/tool.cpp
	libavogadro/src/tool.h
	libavogadro/src/toolgroup.cpp
	libavogadro/src/toolgroup.h
	libavogadro/src/tools/aligntool.cpp
	libavogadro/src/tools/aligntool.h
	libavogadro/src/tools/autoopttool.cpp
	libavogadro/src/tools/autoopttool.h
	libavogadro/src/tools/autorotatetool.cpp
	libavogadro/src/tools/autorotatetool.h
	libavogadro/src/tools/bondcentrictool.cpp
	libavogadro/src/tools/bondcentrictool.h
	libavogadro/src/tools/clickmeasuretool.cpp
	libavogadro/src/tools/clickmeasuretool.h
	libavogadro/src/tools/drawcommand.cpp
	libavogadro/src/tools/drawcommand.h
	libavogadro/src/tools/drawtool.cpp
	libavogadro/src/tools/drawtool.h
	libavogadro/src/tools/eyecandy.cpp
	libavogadro/src/tools/eyecandy.h
	libavogadro/src/tools/manipulatetool.cpp
	libavogadro/src/tools/manipulatetool.h
	libavogadro/src/tools/moveatomcommand.cpp
	libavogadro/src/tools/moveatomcommand.h
	libavogadro/src/tools/navigatetool.cpp
	libavogadro/src/tools/navigatetool.h
	libavogadro/src/tools/selectrotatetool.cpp
	libavogadro/src/tools/selectrotatetool.h
	libavogadro/src/tools/skeletontree.cpp
	libavogadro/src/tools/skeletontree.h
	libavogadro/src/tools/zmatrixdialog.cpp
	libavogadro/src/tools/zmatrixdialog.h
	libavogadro/src/tools/zmatrixmodel.cpp
	libavogadro/src/tools/zmatrixmodel.h
	libavogadro/src/tools/zmatrixtool.cpp
	libavogadro/src/tools/zmatrixtool.h
	libavogadro/src/undosequence.cpp
	libavogadro/src/undosequence.h
	libavogadro/src/zmatrix.cpp
	libavogadro/src/zmatrix.h
	libavogadro/tests/drawcommandtest.cpp
	libavogadro/tests/hydrogenscommandtest.cpp
	libavogadro/tests/moleculebench.cpp
	libavogadro/tests/moleculefiletest.cpp
	libavogadro/tests/moleculetest.cpp
	libavogadro/tests/neighborlisttest.cpp
	libavogadro/tests/primitivemodeltest.cpp
	scripts/installer/setup.nsi
	scripts/setup-for-development.sh
	testfiles/methane.nwo
	testfiles/methanol.nwo