Use cl- prefix for cl-lib function

and remove cl load from modes.el: already required in init.el
Have theme load even if starting regular session

If starting as daemon, add hook to load theme on frame setup, otherwise
just load color theme.
Don't ignore custom.el

Allow customize options to be put in git. Mainly, I just plan to store
an empty file but I don't want emacs to complain when custom.el does not
exist.
Change ess option ess-eval-visibly -> nowait
Remove psgml and xml support

I don't use.  Trying to trim .emacs
Comment and spacing changes
Remove ess shift-enter keybinding

No need. Use C-enter as in default ess. And C-up and C-down are already
bound in comint mode to previous and next history commands.
Use K&R C coding style, remove custom style

No need for custom style. Trying to simplify things.
Move C mode key definitions to ekeys.el
Comment out org-caldav support
Reorder init.el - put package-initialize at top

Nt sure this is necessary, but I reorded init.el to put elpa package
stuff at top, and personalization afterwards
Clean up keybindings file
Change backup settings

Simplify and remove custom file deletion code. Keep autosaves with the
local buffer file but move backups to .emacs/backups
Remove unused functions from efuncs.el

Removed:

- count-words-region: Emacs now has a built in version with same name
  that works fine.
- browse kill ring support. Should have been in init.el or modes.el
  anyway.
- make-file-executable-if-script
- move-buffer-file
- hash-region functions
- compile-adjust-variable
Move some general settings to init.el

And clean org-mode-setup.el Move ido-settings to init.el
Clean up org-mode capture system

- improve capture templates
- remove clock-in out stuff since I don't currently use clocking,
Comment out org-contacts support

I use a contacts.org file, but no current need for org-contacts/gnus.
Maybe add it back at some point.  My current contact capture template
does not depend upon it.
Prefer horizontal window splitting by default

Add function to check if there is only one window and, if so, force
horizontal (side-by-side) split.
Re-order and clean init.el
Add reftex support for pandoc and biblatex

- Add imperfect support for pandoc-style citations
- Add support for biblatex style citations
- Keep natbib-support for now