Mostly trivial updates to some tools
Properly added parameters for make.bion and make.fastq. Fixed check boxes for trivial upgrades.
large commit of tool updates, mostly simple
fixed some typos in xml files, all tools should load
forgot to update chimera.persesus. Small fixes in mothur_wrapper
small changes
updated readme, included repo dependency for blast legacy
New datatypes added for 1.33 (metadata otu_map)
Updated missed make.contigs
Added blast package
Updated ignore files, removed some folders
added hgignore for blast package
Added count parameter for seq.error
accidentally removed a line
Modified mothur tools to use data tables rather than referencing .loc files directly.
Merge branch 'pjbriggs-Mothur_Update_to_1.33' into Mothur_Update_to_1.33
Added urlread.py, which parses the wiki pages for all tools
Added scripts for auto update and source code parse