Got findProtocolGaps() to work. Unrelated tests are failing. Merge
JobModelDebugger into JobModelImpl
Merge branch 'protocol-work'

Conflicts:
	animations/src/main/java/com/chiralbehaviors/CoRE/meta/models/AbstractNetworkedModel.java
	animations/src/test/java/com/chiralbehaviors/CoRE/meta/models/debug/JobModelDebugger.java