Extensible class that holds the necessary accuracy values. Both single items and collections of single items can extend this class.
Holds the relevant data for a Species from the database.
Holds the relevant host (animal) data along with isolates related to that animal.
Holds the relevant isolate information from the database as well as pyroprints associated with it.
Holds the relevant pyroprint data from the database
Handles the database connection and modifies values retrieved according to known issues in name differences, etc.
Potentialy useful interfaces for structuring the tree of pyroprints with its isolate, host, species, etc
Build the phylogeny tree by connecting to the database.
Tree structure handling each Species with its Hosts, Isolates, and Pyroprints and methods to retrieve all of them.
Merge branch 'master' of https://github.com/jmcgover/cplop