Double iterate and double print
made sure get_index doesn't return a valid value and tested a simple pair of strings
mums with BWT indexes work
merged with maximals and ui
mums work in UI, but only print indexes in BWT for now
maximal repeats working with mapping and tests for maximal repeats
Merge branch 'double-iterate' into mum-mapper
merged to mums and made mapper for mums
mums working with mapper and a test
made better mapper for triplets, tests for mums and refactored maximal repeats to use structs instead of pointers to structs
more tests for mapper and mums. Bit vectors addded to mum
quicksort tripleteille ja repeateille tehty mutta ei vielä testattu mitenkään
quicquicksort tripleteille ja repeateille tehty mutta ei vielä testattu mitenkään
comments and static-fying global variables
more comments
nice printing for bit vectors
mum bit vector tests
some fixes for ui
a major bug now fixed with realloc
Merge pull request #28 from WheBurr/debug_malloc

Debug malloc