Cleaning up old code that is just scratch work
Merge branch 'master' into develop
Modified slightly so that STAR genome would take in a path. Still
need to implement STAR functionality.
Starting to write up STAR align procedure. Still haven't tested.
not sure what I changed. I need to get better about that...
Merge branch 'develop' of https://github.com/lunasofia/ITMAT_circularRNA into develop
updating to delete some old files, to conserve space
Merge branch 'develop' of https://github.com/lunasofia/ITMAT_circularRNA into develop
fixed small bug
Merge branch 'develop' of https://github.com/lunasofia/ITMAT_circularRNA into develop
another small bug in STAR call
Merge branch 'develop' of https://github.com/lunasofia/ITMAT_circularRNA into develop
another little bug!
Merge branch 'develop' of https://github.com/lunasofia/ITMAT_circularRNA into develop
Yet another weirdness - star not writing file to correct place. Fixing with
a mv system call, which isn't ideal.
Merge branch 'develop' of https://github.com/lunasofia/ITMAT_circularRNA into develop
yet another tiny syntax thing
Merge branch 'develop' of https://github.com/lunasofia/ITMAT_circularRNA into develop
Made more general (any kind of file, not just fq)
not sure how else to commit that I deleted (actually, moved) a file