Adol-C: upgrade to 2.5.2.
Ipopt: upgrade to 3.11.9.
lumpy-sv: remove skip_clean :all

This has been a no-op since
Homebrew/homebrew@c87736e7b9ded6ccef805f807d5844a1e948c3cc.
mathgl: remove BuildOptions monkeypatch

Only the interface exposed via the `build` attribute is public. The
BuildOptions constant itself is an implementation detail.
Stop using class-level build.stable?, build.devel?, and build.head?

Using these methods in the class body will soon emit a deprecation
warning (only in the class body, they will continue to be supported in
instance methods).
pbsuite 14.7.14
sspace-longread 1-1

SSPACE-LongRead is a stand-alone program for scaffolding pre-assembled contigs
using long reads (e.g. PacBio RS reads). Using the long read information,
contigs (or scaffolds) are placed in the right order and orientation in
so-called super-scaffolds.
platanus: use gcc opt_lib
opencv: add gstreamer, quicktime options

Recommend OpenEXR for interoperability.

Closes #951.
corset 1.02 (new formula)

Closes #1138.
cerulean 0.1: New formula

Cerulean extends contigs assembled using short read datasets like Illumina
paired-end reads using long reads like PacBio RS long reads.
update vips,rb to 7.40.6

- fix similarity rotate+scale
- fix 16-bit PNG save
- fix vipsthumbnail on many-core systems

Closes #1140.
vips: style cleanup
abyss-explorer: add doi, tag
ucsc-genome-browser 304