Fix doc build errors (broken hyperlink)
Simply refer to releases page than to a specific version
Update build instructions with Maven.
Update Introduction.md
Updated documentation, move Makefile to build subdirectory, replace install_jbrowse_bin.sh with setup.sh
Add new create-precompiled target to Makefile. Can be run using make -f build/Makefile create-precompiled
added ant to maven
Update setup.sh to include some webapollo specific dependencies and clean up quick-start guide
added more build targets
Update perl dependencies to use the extlib folder
Update setup.sh to use a proper install instead of copying script files
Update perl package extlib finder and remove build.sh step from run.sh and debug.sh
Re-enable annotation of bare features
updated
updated
updated help message
got the run working with the correct maven phase
updated so that file checks are in the shell script and not the ant tasks
Clean out jbrowse directory during make
Remove contents of apollo dir and run clean on create-precompiled