charts config, and counting procedures
not need to copy over AG data files
staging method for mod1 bits
stage fecal identified
use use
fig 8
ylabel
Addressing @adamrp's comments
added count_samples, addressed comment by @adamrp
in prog
cmdline updates
much progress
adding skin/oral identified samples
font sizes upped
scrubbing whitespace from taxonomy strings
Introduces python data analysis notebook

Adds function for notebook analysis and associated functions.
Updates links
commits ipynab
Updates links so they (hopefully) work correctly
updates notebook