Merge pull request #10 from warrenson/HRM

added test and test data output for find_CAPS.py/xml
Merge pull request #12 from warrenson/HRM

edit: added test for key/value pair for attribute entry details list. Fi...
Merge pull request #13 from warrenson/HRM

add/edit: added tests and test data for vcf_gff.xml tool
Merge pull request #14 from warrenson/HRM

edit: catch sys exit exception from argparse, exit with sucess satus (0)...
Merge pull request #15 from warrenson/HRM

add/edit: Completed first version of ipcress wrapper. Added test data fo...
Merge pull request #16 from warrenson/HRM

edit: tool now takes input from design_primers.xml tool, uses awk to str...
Merge pull request #17 from warrenson/HRM

edit: tool take primer file as input now (3 cols: id p1 p2). Test input ...
Merge pull request #18 from warrenson/HRM

tidy up of ipcress_gff.xml, to use tabs for seperator(fixed test data). vcf_gff.py includes SOURCE value in ID tag
Merge pull request #19 from warrenson/HRM

Hrm
minor edit to args exit status and hard-coded timeout on web service
Minor change to reference sequence location offset to return correct bases.
May not be compatible with indels
Modified vcf2gcf.py to ignore LEN field and infer reference loction by reference string length
corrected printing of reference sequence in design_primers.py
Merge pull request #1 from cfljam/HRM

Hrm