Allow weighted combination of MICO scores across contrasts
Implement weighting in Plasma
Merge branch 'master' into weighting
Comment source code
Merge branch 'master' into accept-multiple

Conflicts:
	src/hmm/analysis.cpp
Specify multiplicity per motif
Document new multiplicity specification on CLI help
Respect new per-motif multiplicity specification
Only define learning tasks for motifs present in the HMM
More informative verbose output
Invert CLI switch --keepall to --best
Remove Simultaneity and ModelChoice
Purge usage of removed ModelChoice
Merge branch 'master' into accept-multiple
Document multiplicity specification
Merge branch 'master' into accept-multiple
Merge branch 'master' into accept-multiple
Merge branch 'master' into remove-simultaneity
Merge branch 'accept-multiple' into remove-simultaneity
Allow demultiplexing of multi-motifs