Deleted one comment towards the end of HixFIFxn.R
Added the function "getLog10(dataSummary,signals,grnum)" which is contained in the script "logTransFxn.R" The example uses data which has already been loaded "dfsummary" and "ratioSignals." Documentation still needs to be improved for this function. I also changed a couple of the names for examples of the functions already loaded.
I had to edit the example for "logTransFxn.R" because it was incorrect. I also had to add "export(getLog10)" to the NAMESPACE file.
Fixed ExpResidFxn.R so that I was making changes to the proper working directory. I added a re-usable example to ExpResidFxn. Made other minor changes.
Added AbsFxn.R which contains the function getAbs(dataAbs,waveCol,signals,colSubsetString,dataSummary,grnum). This function extracts the wavelength peak from an absorbance data frame where each column is the sample and one column contains the wavelengths. I added an example using 4 different wavelengths.
I went back and made sure that all scripts contained information on the data type in the @param and @return designations. I also had to fix the example in meanFIFxn.R. Finally, I buildt on some of the @param designations to include more information/improve documentation
I had to edit some of the @param designations. I forgot to start the @param with the actual argument name for a couple of the functions. I also added SSmultiFxn.R which contains the function getSag. I'm stalled on this function because it requires a data frame "dfSagSignals" which is not in the Shared_optical_data directory. I need to talk to Steve about this.
fixed @param arguments
Added a new function called "getSag" which is found in "SSmultiFxn.R." For the example, I had to add another example dataframe called "dfsags." I also added a dataframe called "dfFluor" which is used for the example in "VectorizedTo3DArray". I updated the dataInfo.R file to reflect the addition of these dataframes. I also went thorugh the dataInfo.R file and added more information for each example dataframe.
Added these dataframes
Added the VectorizedTo3DArray.R file which contains the function VectorizedTo3DArray(df,ExEm).
added SSmultiFxn.R and some extra man files
Added the function getAbs(dataAbs,waveCol,wavs,colSubsetString,dataSummary,grnum).
Edited the DESCRIPTION and NAMESPACE files. Also edited the AbsFxn.R script with the function getAbs. Edited the vectorizedTo3DArrayFxn.R to contain @import reshape2 since it depends on that function
Had to edit the example in AbsFxn.R so that it runs properly
omitted the library call for reshape2
Added man files
had to fix a bug in the example for HixFIFxn.R
I added the script PlotEEMS2Fxn.R which contains the function plotEEMs2 for plotting excitation emission spectra. I also added an example dataset called "ex_ems" which contains the important EEMs peaks. I updated the dataInfo.R file
added new man files