MAINT: more specific name for compute_index.py
Merge branch 'master' of github.com:qiime/qiime into index_name_change
Standardize option longnames on underscores

Fix #1786
Update changelog with dash to underscore changes

Conflicts:
	ChangeLog.md
Remove option-label entry from script_info

Was used by n3phele, not needed any more
Renaming teh things
Merge branch 'master' of https://github.com/biocore/qiime into dashes_to_underscores-issue-1786

Conflicts:
	ChangeLog.md
	scripts/denoiser.py
ENH: Add support error message

Granted that qcli is updated to version 0.1.1, error messages in QIIME
will no longer print the script usage text (also known as the wall of
text), instead only the error message and a small string with a URL
where users can find support will be printed, see this example:

(qiime-dev)yoshikivazquezbaeza:qiime@extra-help$ print_qiime_config.py --does-not-exist
Error in print_qiime_config.py: no such option: --does-not-exit

If you need help with QIIME, see:
http://help.qiime.org

Note that we don't "have" to update setup.py to require qcli==0.1.1,
because 0.1.0 will work just fine, the only problem is that the wall of
text will continue to be printed.

For more info see this PR:
https://github.com/biocore/pyqi/pull/265
Merge branch 'master' of https://github.com/biocore/qiime into dashes_to_underscores-issue-1786
BLD: Update qcli minimum required version
Fix typo
Merge branch 'master' of https://github.com/biocore/qiime into dashes_to_underscores-issue-1786
BLD: Update required version of biom

Fixes #1744
BLD: Add upper bound to qcli version
ENH: first pass at updates to the workflow that uses this
ENH: updated variable name for clarity
MAINT: removed out-dated and un-used parameters
ENH: added --normalize option
ENH/REL: removed summarize_otu_by_cat.py, fixes #1798
MAINT: removed script test data