Update auto-generated documentation

Repository: openmicroscopy/bioformats
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Generated by BIOFORMATS-5.0-latest-docs-autogen#274 (http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest-docs-autogen/274/)
Add branch-specific link for downloading the JAR file if unfound
Also modify link in bf.bat
Merge pull request #1300 from snoopycrimecop/dev_5_0/latest/autogen

Update auto-generated documentation
Merge pull request #1281 from melissalinkert/5.0.4-version-history

Update release notes for 5.0.4
Merge pull request #1298 from ctrueden/fix-cli-dev

Fix CLI tools when used from a source working copy
Merge pull request #1301 from sbesson/tools_download_link

Add branch-specific link for downloading the JAR file if unfound
merge dev_5_0 -Dorg -Ssuccess-only

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 1305 ctrueden 'Add support for PrairieView version 5.2 datasets' (status: pending)
  # PR 1282 melissalinkert 'Update version numbers to 5.0.4' (label: exclude)
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Generated by OME-5.0-merge-push#206 (http://ci.openmicroscopy.org/job/OME-5.0-merge-push/206/)