Remove a large portion of deprecated GWT calls.
Unused class.
Fixing a possible race condition.
Swift-dev is installed on local disk now
Removed vast majority of legacy GWT calls.
Tolerance parses daltons as it says it should.
Only report each ion series in one line.
UI enabling mzML
mzML on is default.
Simplified, more readable test.
Each task defines equals and hashcode
Search runner is simplified.

msConvert supports multiple extensions.
Runner supports .mzML files

The search engines may still choke on the mzML input (Sequest will, so will msmsEval and QA).
Adding mzML to the UI
Minor typo
Common peaklist library unifying .mgf and .mzml parsers.
We never write .mgf anymore.
Extracted reader and writer of peaklist.
PeakListReaders allows registration of all the reader factories.
Testing mgf reader.