SortMeRNA updates and latest tables

Bit of a big PR...
Sweet, then let's leave as is.

On (Dec-03-14|10:28), Daniel McDonald wrote:
> > @@ -67,7 +68,8 @@ def load_category_files(category_files):
> >  
> >      for (category, category_file) in category_files.iteritems():
> >          if isfile(category_file):
> > -            cat_table = parse_biom_table(open(category_file, 'U'))
> > +            with biom_open(category_file, 'U') as fp:
> 
> Nah, that should be stable
> 
> On Wed, Dec 3, 2014 at 10:55 AM, Yoshiki Vázquez Baeza <
> notifications@github.com> wrote:
> 
> > In americangut/make_phyla_plots.py:
> >
> > > @@ -67,7 +68,8 @@ def load_category_files(category_files):
> > >
> > >      for (category, category_file) in category_files.iteritems():
> > >          if isfile(category_file):
> > > -            cat_table = parse_biom_table(open(category_file, 'U'))
> > > +            with biom_open(category_file, 'U') as fp:
> >
> > I guess that if we don't forsee these functions disappearing in the
> > future, then it's fine to leave as is. Up to you.
> > … <#14a114b3f511ef0b_>
> > On (Dec-03-14| 8:23), Daniel McDonald wrote: > @@ -67,7 +68,8 @@ def
> > load_category_files(category_files): > > for (category, category_file) in
> > category_files.iteritems(): > if isfile(category_file): > - cat_table =
> > parse_biom_table(open(category_file, 'U')) > + with
> > biom_open(category_file, 'U') as fp: Probably... but this works and is
> > functionally equiv. Can change if you'd like tho --- Reply to this email
> > directly or view it on GitHub:
> > https://github.com/biocore/American-Gut/pull/116/files#r21242798
> >
> > —
> > Reply to this email directly or view it on GitHub
> > <https://github.com/biocore/American-Gut/pull/116/files#r21250374>.
> >
> 
> ---
> Reply to this email directly or view it on GitHub:
> https://github.com/biocore/American-Gut/pull/116/files#r21252864