Added if statement to test for exome or WGS data. Works with WGS but not exome yet
Added exome only option to MakeCircosPlot. Will use WGS if available. If not, will use exome data. Will use WGS if both are available.
corrects regex in MakeCircosPlot.pm to work with the snv and indel files from exome, WGS, or exome and WGS
Corrects column used for sort command on top 100 gene names used for the outside circle of Circos plots
Fixed indel color coding for MakeCircosPlot.pm
Made subroutine for RNA
Merge branch 'master' of github.com:kkrysiak/genome

Conflicts:
	lib/perl/Genome/Model/ClinSeq/Command/MakeCircosPlot.pm
Merge pull request #140 from kkrysiak/master

MakeCircosPlot updates