[FEATURE] Added a very simple app determines for each read in a reference file if it has an entry in the provided sam files.
[INTERNAL] Moved from extras to core.
[DOC, INTERNAL] Added a read and made some minor description changes.
[FIX] fixed snp_store test under Windows
[FIX] fixed typo
Merge pull request #300 from weese/hotfix/snp-store

[FIX] fixed snp_store test under Windows (master)
[FIX-#235] Header guard fixes.
[FIX] fixed more header guards
[FIX] even more header guards
[FIX] nvcc header guard
Merge pull request #303 from weese/hotfix/header-guards

[FIX] header guards (master)
[FIX] Changed the CMake files such that all files are found and some additional info.
[FIX] fixed ambiguous function problem in VS2013
[FIX] adapted snp_store gold standard according to bug fixes
Merge pull request #306 from weese/hotfix/snp-store

[FIX] fixed ambiguous function problem in VS2013
[FIX] removed VS12 ambigous bug
Merge pull request #308 from weese/hotfix/fix-vs12

[FIX] removed VS12 ambigous bug
[FIX] simplified some math and conversions
Merge pull request #310 from weese/hotfix/snp-store

[FIX] simplified some math and conversions
[FIX] Disabling Mason2 in Visual Studio <10

Somehow copy constructors are not properly called with 64 bit binaries.  32 bit binaries are fine.