EX-64 (cgates kmeng) First commit to branch.
EX-64(kmeng) committing some changes before switching to develop branch.
EX-64(kmeng cgates) Continued refactoring of variant caller modules.
Mutect is tested.
(cgates): remove Unknown caller and begin simplifying error handling in
tag.py:determine_callers2
EX-64 (cgates): substantive refactors to tag.py
untangle branches
Merge branch 'develop' of git@github.com:umich-brcf-bioinf/Jacquard.git into develop
fix project name
EX-64 (cgates/jebene/kmeng): Resistance is futile. All will be
assimilated.
EX-64 (kmeng) changes made to strelka module and its test.
Revert "EX-64 (kmeng) changes made to strelka module and its test."

This reverts commit abd2f2c3ac208d27726d19f2d3ae9548c580bc70.
Revert "Revert "EX-64 (kmeng) changes made to strelka module and its test.""

This reverts commit 706a9ef8e719ac4face6145a4be46459d1a88ca3.
EX-64 (cgates/kmeng): Strelka tests and merge from branch
EX-64 (cgates kmeng) Finishing up refactors
EX-82(kmeng): Deprecation warnings removed in Eclipse environment.
EX-64(cgates kmeng): Final changes before merge.
EX-64(cgates kmeng): Merging develop into simply_variant_callers.
Ex-64(cgates kmeng): Fixing bug so that input files may be run properly.
EX-64(cgates kmeng): Fixing the way mutect validates files.
EX-64(cgates kmeng): Modifying test for mutect.