some changes on qFinderDMM
Merge remote-tracking branch 'mothur/master'
added Jensen-Shannon calc. working on get.communitytype command.  fixed bug in get.oturep command with count file. fixed bug in trim.flows that caused issue when you read back in scrap flow file.  added log transform parameter to trims.seqs command and allow non paired barcodes and primers to use reorient. fixed bug in lefse when kruskal returned nan.
Merge remote-tracking branch 'mothur/master'
converted jsd calculation to be based on relative abundance
Test new machine.
working on pam
Merge remote-tracking branch 'origin/master'
added rjsd calculator.  improved work balance load between processors for paralellized commands: metastats, unifrac.weighted, unifrac.unweighted, parsimony, chimera.uchime, chimera.perseus, chimera.slayer, shhh.seqs and pre.cluster.
working on get.communitytype command
fixed bug in pam
added mergesfffiles command. added current directories to get.current commands outputs.  modified deunique.seqs output filename creation.
added relabund parameter to classify.seqs and summary.tax commands
fixes while testing 1.33.0
fixing help
fixes while building
fixed bug in make.biom with picrust that didn’t allow for unclassified OTUs. fixed bug in fastq.info that quit after 100000 seqs
pcr.seqs bug fix.  working on shannon range calc
added shannonrange calc.
added shared file to make.table