use upgraded samtools and bcftools in formats.sam
add --minaccn to formats.bed.filter()
simplify ALLMAPS pipeline commandline args
Merge branch 'master' of github.com:tanghaibao/jcvi
add illustration for allmaps.estimategaps()
aesthetic improvement for projects.allmaps.estimategaps()
mv GapEstimator to assembly.allmaps
compute gaps based on on mlg in assembly.allmaps.estimategaps
finished implementation of assembly.allmaps.estimategaps()
add panel C in projects.allmaps.estimategaps()
report marker density in assembly.allmaps.summary()
modify default component_type in formats.agp.OO()
add xlabel in projects.allmaps.estimategaps()
rename projects.allmaps.allmapsQC to simulation()
handle case when hamiltonian() call fails in assembly.allmaps
add projects.allmaps.comparebed()
output set difference in projects.allmaps.comparebed()
make assembly.allmaps.path() a pipeline
add --noplot to assembly.allmaps.path()
add formats.bed.random()