Masai mod added
Readgroups added
Merge branch 'master' into masai_fseq
Merge branch 'masai_fseq' of github.com:clark-lab/ngsane into masai_fseq
Using named pipes ... wip
Masai optimizations
merge with master
Merge branch 'master' into masai_fseq
Merge branch 'new_mods' into masai_fseq

Conflicts:
	conf/sample_header.sh
Merge branch 'master' into masai_fseq
cleanup
Input tagdir generation refactored into common task
wigToBigWig now considered essential
Input tagdir generation refactored into common task
Bugfix samstat output
Bugfix output directory
common task log file refactored
Bugfix genome digestion
Merge branch 'masai_fseq'
input check refactored