fixes for 3D extraction summary pdf

NOTE: Pools currently hang
Fix for large datasets hanging extraction pools. Added chunksize limit.
Now pass frame index in to the workers so they can be read-out unordered.
adapted imaging parameters to Prairie v5.2
Merge branch 'master' into nathan_3D_extract_fix
Merge branch 'master' into nathan_3D_extract_fix
Merge pull request #55 from pkaifosh/master

Sped up some slow tests by clipping the dataset
bug fix for memory issue related to *it.chain
support for old prairieview xml
Merge branch 'master' into nathan_3D_extract_fix
Merge pull request #56 from nbdanielson/3D_fixes

3D fixes
Minor fix to sequence.py

Missing type cast caused motion correction to fail on Windows
Sped up some slow tests by clipping the dataset
bug fixes in slicing _motion_corrected_sequence
bug fix for memory issue related to *it.chain
bug fixes in slicing _Motion_Corrected_Sequence
fixes for 3D extraction summary pdf

NOTE: Pools currently hang
Fix for large datasets hanging extraction pools. Added chunksize limit.
Now pass frame index in to the workers so they can be read-out unordered.
adapted imaging parameters to Prairie v5.2
support for old prairieview xml
Merge pull request #57 from jzaremba/mc_bug_fixes

Mc bug fixes & changes to extraction