updates to Kyles polishing and fixing of the job_upload.sh script, rename CGHWSI back to CGHWSI.py
Merge branch 'master' of ssh://github.com/kellrott/tcga_realign into cwilks2
Merge branch 'master' of ssh://github.com/kellrott/tcga_realign into cwilks2
moved all subdir py scripts into pyscripts
switch job_upload.sh to do submission and upload, rather than just validating
fixed spelling typo
Merge remote-tracking branch 'origin/cwilks2'
Fixing python script path