Added auth, better error trapping
bugfix, source list not properly created
Merge branch 'master' of github.com:MG-RAST/MG-RAST-Tools

Conflicts:
	tools/bin/m5nr-tools.pl
add rename_columns.r function
fix doc
added heatmap options
Update plot_mg_boxplot.r
Update plot_mg_boxplot.r
Update plot_mg_boxplot.r
Update plot_mg_boxplot.r
Merge pull request #69 from jaredbischof/master

Script to upload a local file to Shock with the attribute type=temp
Merge pull request #70 from jaredbischof/master

Renamed script, fixed help command example.
Merge branch 'master' of github.com:MG-RAST/MG-RAST-Tools
doc update
Merge pull request #71 from teharrison/master

doc text update and heatmap options added
Update group_stats_plot.r
Update group_stats_plot.r
Update group_stats_plot.r
now outputs as processes file
upped default plot sizes