Updates to support Linux - now builds on both Windows and Ubuntu 12.04
Minor cleanup of unused files.
Reviewed by M.Milford

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13220 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
One more change to remove hardcoded limit of 7 positions in ZeissCAN29 Condenser contrast

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13221 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Removed warnings in PositionListDlg by giving it direct access to the AcqControlDlg object

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13222 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Eliminate the need for 'make install-ijplugin'.

Now you can just run 'make install' even if --enable-imagej-plugin is
used. Also makes the install path determination much cleaner.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13223 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13224 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
FRE / PCO AG / 22.04.14

- MicroManager.cpp: fixed uninit process (172 - 174, 1438, 1444); added set to zero for camera struct (134)
- new pco_kamlib.dll

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13205 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
[nggb] Readd AcquireMultipleRegions plugin.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13206 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Add missing @Deprecated annotations.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13207 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
[nggb] Activation script now removes comment header.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13208 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
[nggb] Make activation script perform 'git add'.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13209 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
[nggb] Activate!!

Replace Unix build scripts with the 'nextgen' versions. Remove old build
scripts. See doc/how-to-build.md for information on the new scripts.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13210 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
[nggb] Remove 'nextgen' copies and script.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13211 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13212 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Add AndorSDK3 to Unix build (for Linux).

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13225 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
AndorSDK3: Sort filenames in Makefile.am.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13226 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Two-level hierarchical plugin menu (Unix).

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13227 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Delete old Image Flipper.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13228 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Edit plugin menu names and tooltips.

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13229 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
Two-level hierarchical plugin menu (Windows).

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13230 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
revert to old working revision and keep new development in navigator plugin

git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@13231 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd