merge develop -Dnone -Ibreaking -Eexclude -Sno-error

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 1480 melissalinkert 'Imspector OBF: support version 5 stacks' (user: melissalinkert)
  # PR 1493 melissalinkert 'Add a page that gives an overview of each repository component' (user: melissalinkert)
  # PR 1407 melissalinkert 'TIFF: fix plane count calculation for pyramids with multiple planes' (user: melissalinkert)
  # PR 1309 melissalinkert 'Allow tile-based access of large JPEG-2000 images' (exclude comment)
  # PR 1492 sbesson 'Command line profiling' (user: sbesson)
  # PR 1015 qidane 'Messy binary' (exclude comment)
  # PR 1479 qidane 'Updated XSLT for units conversion' (exclude comment)
  # PR 1442 bramalingam 'Update roi handler' (user: bramalingam)
  # PR 1489 sbesson 'Use Javadocs rather than source code links when possible' (user: sbesson)
  # PR 1495 melissalinkert 'ImageJ: enable min/max calculation if any series contains float data' (user: melissalinkert)
  # PR 1443 joshmoore 'Genshi ZIP' (user: joshmoore)
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (user: melissalinkert)
  # PR 1177 rleigh-dundee 'specification: Add metadata for HDF5 embedding' (exclude comment)
  # PR 1161 sommerc 'Initial CellH5 Reader class' (user: sommerc)
  # PR 1488 bjoernthiel 'Read up to stack version 5' (user: bjoernthiel)
  # PR 1426 qidane 'Initial Rendering Definitions schema' (exclude comment)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (user: melissalinkert)
  # PR 1381 melissalinkert 'Parse physical pixel sizes from CellSens .vsi datasets' (user: melissalinkert)
Updating e42fa0b..b97e94a
Previously merged:
  # PR 1496 snoopycrimecop 'Update auto-generated documentation'
  # PR 1481 rleigh-dundee 'cpp: bioformats: Add resolve argument to resolveReferences'
  # PR 1477 melissalinkert 'Flex: improved metadata handling'
  # PR 1485 mtbc 'minor nitpick tweaks to docs'
  # PR 1486 mtbc 'add an overview for new Bio-Formats developers'

Generated by OME-5.1-breaking-push#233 (http://ci.openmicroscopy.org/job/OME-5.1-breaking-push/233/)