Replace most usage of std.c.* with the druntime equivalents

In preparation for [deprecation of the std.c.* modules](https://github.com/D-Programming-Language/phobos/pull/2337), because the deprecation warnings for the std.c.* modules seem to cause errors in the dmd tests, so this has to be pulled first.  Most are straightforward substitutions for the druntime modules that are really imported anyway, with the exception of the narrower imports at the bottom of the dhrystone benchmark sample and test files and the `system()` call in d_do_test.d.  Three imports of `std.c.windows.com` remain in the samples, they'll have to wait till that module is moved over to druntime.