fixed a bug that was preventing Java code coverage
working version based on what sean did earlier
Merge pull request #6 from nelsonni/corpus_refactor

Full_Corpus Refactor
refactor and bugfixes -hugh & sean
full merge of nick and sean/hugh files
Merge branch 'nelsonni-corpus_refactor'
bug fix
Merge pull request #2 from McdonaldSeanp/master

Merge of Sean/Hugh and Nick