GCP-8491
GCP-8588 - update results based on replacement gid and don't return listdata with deleted germplasm; added paging capability
GCP-8588 - get preferred name changes
Merge remote-tracking branch 'origin/master' into branch_update_from_changes
GCP-8588 - change getPreferredNameValueByGID to check changes table
GCP-8588
1. cleaned-up coode to remove unnecessary comments
2. revised methods to check records in the CHANGES table (through stored procedure)
GCP-8588 - added String as a wrapper type
Merge branch 'master' into branch_update_from_changes
Resolved conflicts: src/main/java/org/generationcp/middleware/manager/GermplasmDataManagerImpl.java - added searchPublicData
Merge branch 'master' into branch_update_from_changes. Resolved conflicts in GenericDAO.java and GermplasmListManagerImpl.java
Merge branch 'master' into branch_update_from_changes
Removed call to deprecated middleware method and changed to call to stored procedures which handles CHANGES logic
GCP-8816
To be reviewed by Darla
Merge branch 'master' into branch_update_from_changes
Conflicts: src/test/java/org/generationcp/middleware/manager/GermplasmListManagerImplTest.java
Changed middleware method getGermplasmWithPrefName to reflect the CHANGES record. This method is used in getting the pedigree tree of a germplasm.

Issue: GCP-8816

Reviewer: Darla (post-commit)
Changed calls to get the correct pedigree tree of a germplasm

Issue: GCP-8816

Reviewer: Darla (post-commit)
Set local and central database name in pedigreedatamanager (as used by the stored procedures handling CHANGES record)

Issue: GCP-8816

Reviewer: Darla (post-commit)
change getPreferredIdbyGID to call stored procedure "getPreferredIDNamesRecordByGid"

Issue: GCP-8816

Reviewer: Darla (post-commit)
Deprecate unused methods

Issue: GCP-9771

Reviewer: Darla (post-commit)
Change methods that retrieve germplasms to handle CHANGES records

Issue: GCP-9771

Reviewer: Darla (post-commit)
Merge branch 'master' into branch_update_from_changes
Merge branch 'master' into branch_update_from_changes

Conflicts:
	src/main/java/org/generationcp/middleware/manager/GermplasmDataManagerImpl.java
	src/main/java/org/generationcp/middleware/manager/InventoryDataManagerImpl.java
	src/main/java/org/generationcp/middleware/manager/api/GermplasmDataManager.java
	src/main/java/org/generationcp/middleware/manager/api/GermplasmListManager.java