[DAUTREBANDE] 

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21372 b5f69653-2bf5-0310-8201-b0dafb8e1405
Improving handling of potts element aspect ratios for elements with one or 2 lattice sites.

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21374 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2300 An iterative scheme for matching pressures at boundaries which converges in a sensible time.

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21381 b5f69653-2bf5-0310-8201-b0dafb8e1405
Revert r21374 (no ticket number) before Nightly because it breaks the build

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21383 b5f69653-2bf5-0310-8201-b0dafb8e1405
Revert r21372 (no ticket number) before Nightly because it breaks the build

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21384 b5f69653-2bf5-0310-8201-b0dafb8e1405
Re-commit r21374 (reverted in error)

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21385 b5f69653-2bf5-0310-8201-b0dafb8e1405
Fix to r21384 (Revert of r21372) which was committed in too much haste

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21386 b5f69653-2bf5-0310-8201-b0dafb8e1405
#1369 Allow a HDF5 permutation to be added with an "unsafe" (I know what I am doing) flag.

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21392 b5f69653-2bf5-0310-8201-b0dafb8e1405
#1369 Allow simulations with "original node ordering" to be check-pointed and restarted.

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21393 b5f69653-2bf5-0310-8201-b0dafb8e1405
#1369 Oops.  Missing data from r21393.

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21394 b5f69653-2bf5-0310-8201-b0dafb8e1405
#1660 Changed PostProcessingWriter to pad with -999 rather than hitting NEVER_REACHED. Made a test that hits this by having 2 paces on one node but only 1 pace on the other in a 2 node mesh.
Also tidied test/data/PostProcessorWriter into test/data/PostProcessingWriter.

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21395 b5f69653-2bf5-0310-8201-b0dafb8e1405
#1660 Fix path for moved dataset

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21396 b5f69653-2bf5-0310-8201-b0dafb8e1405
mend memory test

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21398 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2441 - very minor edits to comments etc.

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21401 b5f69653-2bf5-0310-8201-b0dafb8e1405
Add some (commented out) lines which improve IO performance hugely on HPC. Also refactored chunk calc stuff slightly so that the target size is not exceeded (this means less wasted space when used in combination with alignment).

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21403 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2410 Nightly test Sundials 2.3.0 compatibility.

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21411 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2441 - split `CellBetaCateninWriter` into .cpp and .hpp files, and rename `CellMutationStatesWriter` to `CellMutationStatesCountWriter` for consistency with the other `*CountWriter`s

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@21413 b5f69653-2bf5-0310-8201-b0dafb8e1405