comment out core_memory_pool_examine
minor changes merged
thorium_actor: send the output of thorium_actor_log in stderr

Reported-by: Fangfang Xia <fangfang@gmail.com>
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
thorium: add thorium_nop that does nothing at all

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
unitig_visitor: use %s when printing a string

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
thorium: thorium_actor_log is now a macro that can be disabled

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
thorium_actor: disable log level LOG_LEVEL_DEFAULT by default

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
unitig_visitor: by default, nothing is logged

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
thorium: use THORIUM_ENABLE_LOG_LEVEL and THORIUM_DISABLE_LOG_LEVEL

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
documentation: add thorium_actor_log in documentation

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
spate: use thorium_actor_log

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
thorium: don't print new line twice

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
core_manager: use thorium_actor_log

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
core_writer_process: use thorium_actor_log

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
biosal_assembly_graph_store: use thorium_actor_log

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
biosal_sequence_store: use thorium_actor_log

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
thorium: add options -enable-actor-log and -disable-actor-log

[boisvert@bigmem biosal]$ mpiexec -n 4 ./applications/spate_metagenome_assembler/spate -k 33 -threads-per-node 8 ~/dropbox/S.aureus.fasta.gz \
    -enable-actor-log all
[boisvert@bigmem biosal]$ wc -l log
5377 log

[boisvert@bigmem biosal]$ mpiexec -n 4 ./applications/spate_metagenome_assembler/spate -k 33 -threads-per-node 8 ~/dropbox/S.aureus.fasta.gz
[boisvert@bigmem biosal]$ wc -l log
2012 log

Link: https://github.com/GeneAssembly/biosal/issues/841
Link: https://github.com/GeneAssembly/biosal/issues/840
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
documentation: add documentation for thorium_actor_log

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
scripts: add script to test option -enable-actor-log

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
biosal_input_controller: use thorium_actor_log

[boisvert@bigmem biosal]$ mpiexec -n 4 ./applications/spate_metagenome_assembler/spate -k 33 -threads-per-node 8 ~/dropbox/S.aureus.fasta.gz
[boisvert@bigmem biosal]$ wc -l log
1898 log

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>