Translating Coffescript

There are a LOT of files. I haven't gotten through all of them yet, but I'll just be adding comments for now so it doesn't cause conflicts next time I send a pull request. Refactoring might take some time, but I'll get there. 

WARNING: Also, I deleted all the CoffeeScript files from the repository to clean things up. We don't really need them. The compiler also transferred any comments that were previously there, so I we aren't missing much if we delete the old files.