begin integration of msms
cosmetic changes
update default parameters of refined search
update default values
update docs
add warning when using 'use.shm'
update docs
update README
change "google+" to "google plus"
update jaatha howto
update howtos
updates release date
renaming source file
update publication date
add warning for smoothing
make unittests run on windows
update vignettes
add msms simulation cmd
make simulation work basically
add strength of selection