Add Multiple File Uploads to Assignments

This refers to issue #383. To quote the original commit:
> When creating an assignment, there is an option to allow the learners to upload multiple files, and if this is selected the admin can set a maximum number of files. Because of this, submissions with multiple files are downloaded as .zip archives, and when downloading all submissions at once the individual student submissions are put into folders within the archive. The commenting system had to be revised as well, and now comments are only attached to the assignment and the learner's proxy_id, not the individual afile_id's.
Instead of adding it twice, would it be better to use the ob_clear_open_buffers() function (defined in functions.inc.php).