Deleted temporary files
Ignore results of molecular dynamics method
[TGROUP] Use OpenBabel for results output.

Many small changes here and there.
Deleted output binary file
[TGROUP] Read input file for molecular dynamics from command line
[TGROUP] Moved test data to separate folder
Added function to write matrix to .mat file
Fixed error during reading matrix from .mat file

Error reported if file is not ended with empty line. Fixed.
[TGROUP] Provide input and output files to GA from command line
Header for mat_file_writer.c