Commit made by the Bioconductor Git-SVN bridge.
Consists of 13 commit(s).

Commit information:

    Commit id: efbe4bc99c71afe60c4414707e54024dcd0d186e
    Commit message:
    Removed vignettes/Makefile as it was not being used and caused problems
    with R-alpha. Fixed problems preventing crlmmDownstream.tex from building.

    git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VanillaICE@74237 bc3139a8-67e5-0310-9ffc-ced21a209358
    Committed by d.tenenbaum <d.tenenbaum at bc3139a8-67e5-0310-9ffc-ced21a209358>
    Commit date: 2013-03-12T11:45:25-07:00

    Commit id: 86506ddbe5d80afb45c7855a947d8602c36f787b
    Commit message:
    Update crlmmDownstream vignette
    Committed by Rob Scharpf <rscharpf at jhsph.edu>
    Commit date: 2013-03-19T12:05:44-07:00

    Commit id: 7aa0b4a5d7b17c21c7cf5977816f5167ce18e68b
    Commit message:
    merge with collab

    * collab:
      Update crlmmDownstream vignette

    git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VanillaICE@74572 bc3139a8-67e5-0310-9ffc-ced21a209358
    Committed by rscharpf@jhsph.edu <rscharpf at jhsph.edu@bc3139a8-67e5-0310-9ffc-ced21a209358>
    Commit date: 2013-03-19T12:20:23-07:00

    Commit id: 7bc9fee89df722685f086efbba30b1042aa533e4
    Commit message:
    bump y of x.y.z version number for BioC 2.12 release

    git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VanillaICE@75263 bc3139a8-67e5-0310-9ffc-ced21a209358
    Committed by d.tenenbaum <d.tenenbaum at bc3139a8-67e5-0310-9ffc-ced21a209358>
    Commit date: 2013-04-03T14:32:27-07:00

    Commit id: 3accbbd5ea89c3daa289e2da12b0795b7bb17f4e
    Commit message:
    Bump y in version x.y.z to odd number in devel

    git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VanillaICE@75270 bc3139a8-67e5-0310-9ffc-ced21a209358
    Committed by d.tenenbaum <d.tenenbaum at bc3139a8-67e5-0310-9ffc-ced21a209358>
    Commit date: 2013-04-03T15:06:11-07:00

    Commit id: 09c6aeb59e1cb3d01124a4be5161476abccf9b1c
    Commit message:
    bump versions prior to creating BioC 2.13 branch

    git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VanillaICE@81642 bc3139a8-67e5-0310-9ffc-ced21a209358
    Committed by d.tenenbaum <d.tenenbaum at bc3139a8-67e5-0310-9ffc-ced21a209358>
    Commit date: 2013-10-14T14:29:21-07:00

    Commit id: 5825e13520c23c879169a54e02e3e8110dbf338d
    Commit message:
    bump version after release branch has been created

    git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VanillaICE@81644 bc3139a8-67e5-0310-9ffc-ced21a209358
    Committed by d.tenenbaum <d.tenenbaum at bc3139a8-67e5-0310-9ffc-ced21a209358>
    Commit date: 2013-10-14T14:47:19-07:00

    Commit id: ff44db36da948762864876b77927476cc596d0c9
    Commit message:
    bump version. put date tag in description

    git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VanillaICE@83232 bc3139a8-67e5-0310-9ffc-ced21a209358
    Committed by rscharpf@jhsph.edu <rscharpf at jhsph.edu@bc3139a8-67e5-0310-9ffc-ced21a209358>
    Commit date: 2013-11-12T14:33:28-08:00

    Commit id: e1d098bf4817290afd6a390fc83f3d28985ac009
    Commit message:
    Need drop=FALSE in generatorViterbi when sex chromosomes present
    Committed by Rob Scharpf <rscharpf at jhsph.edu>
    Commit date: 2013-11-14T05:17:26-08:00

    Commit id: ad3c3de49957cc3e7cf1e66341daad055ead104c
    Commit message:
    Fix indentation
    Committed by Rob Scharpf <rscharpf at jhsph.edu>
    Commit date: 2013-11-19T07:28:59-08:00

    Commit id: 916c2323dcc50ef8b33ccc4a9f2947ef554afaac
    Commit message:
    v. 1.25.3 remove tab-spacing on unit test files
    Committed by Rob Scharpf <rscharpf at jhsph.edu>
    Commit date: 2014-03-04T18:01:50-08:00

    Commit id: 5180487cee63203760d40ba95ac2b8c25fbafd21
    Commit message:
    created git-svn bridge
    Committed by Rob Scharpf <rscharpf at jhsph.edu>
    Commit date: 2014-03-04T18:15:38-08:00

    Commit id: c4bdf26d6d69ff76b02a70ebc617b05506eae0c4
    Commit message:
    1.25.4 merged with collab
    Committed by Rob Scharpf <rscharpf at jhsph.edu>
    Commit date: 2014-03-04T18:17:05-08:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VanillaICE@87103 bc3139a8-67e5-0310-9ffc-ced21a209358