cassiopee 1.0.1

Cassiopee index and search tool and library.
It scans an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions.

This program provides both a binary (Cassiopee) and a shared library.

Index is based on a suffix tree with compression. It is possible to save the indexed sequence for later use without the need to reindex the whole sequence (for large data sets).

This formula installs Cassiopee.