btw, I just verified this fix addresses the plot issue. I'll merge once
this debug flag is addressed


On Sun, Apr 13, 2014 at 5:53 PM, Daniel T. McDonald <
Daniel.Mcdonald@colorado.edu> wrote:

> I recommend adding:
>
> ``action='store_true'`` to
>
>
> https://github.com/biocore/American-Gut/blob/master/scripts/make_phyla_plots_AGP.py#L239
>
>
> On Sun, Apr 13, 2014 at 5:36 PM, J W Debelius <notifications@github.com>wrote:
>
>> In scripts/make_phyla_plots_AGP.py:
>>
>> > @@ -297,7 +297,7 @@ def main(otu_table, mapping_data, cat_tables, output_dir, sample_type='fecal',
>> >           cat_tables=categories,
>> >           samples_to_plot=samples,
>> >           sample_type=sample_type,
>> > -         debug=args.debug)
>> > +         debug=eval(args.debug))
>>
>> I tried it that way, but when I passed only -d it triggered an error.
>> And, args.debug was a string.
>>
>> --
>> Reply to this email directly or view it on GitHub<https://github.com/biocore/American-Gut/pull/87/files#r11568653>
>> .
>>
>
>