Switched to blend4j 0.1.2
- pom.xml: switched to blend4j 0.1.2 because of issues with blend4j 0.1.1.
- LineCountExample, LineCount.ga, and Constants: added an example with a line, word, and character count workflow.
- FileUtils: added the createTemporaryFileFromURL method.
- ConcatenateExample: this workflow does not work on the Galaxy server at Vancis, so it now uses the central Galaxy server.
Fixed two Checkstyle issues
Added a GalaxyWorkflow unit test
- GalaxyWorkflowTest: added the testRun test method and some minor changes.
Moved shared example functionality to BaseExample.checkWorkflowSingleOutput
- BaseExample: added the new checkWorkflowSingleOutput method.
- ConcatenateExample: call the BaseExample.checkWorkflowSingleOutput method and removed the old checkWorkflowOutput method.
- LineCountExample: call the BaseExample.checkWorkflowSingleOutput method and removed the old checkWorkflowOutput method.
Merge branch 'master' of github.com:CTMM-TraIT/trait_workflow_runner