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Removed files.php and added it to the .gitignore (poses a vulnerability
otherwise).
Moved the scriptclock js to the assets/ under it's own file, then call
it from the main index.
Moved css and img into their own respective modular housing under
assets/.
Removed redundant comments.
Removed multiple instances of <html> and <head> tags in the scriptclock
(these are redundant if included).
Mmm, indenting. Bitches love indentation.
Structure changes, because I'm a prude

Also removed leading slash for files.php. This technically means the /
of the server and can really mess up on some systems. It's best practice
to make this relative when possible.
Merge pull request #1 from zwigoose/jasons-fixes

Went ahead and merged it. I'll allow the prudeness for the sake of cleanliness.