blast-srl2csv: fixed pod and added -path option
CLdb_plotLoci: png option
changed example directory structure
CLdb_writeTable: updated
podfix for CLdb_writeTable
CLdb_dna_segs_orderByTree: name parsing bug fix
CLdb_plotLoci: --format flag
added tree_rotate.r
orderByTree: nw_prune option
tree pruning and ordering scripts updated
added -feature to dna_segs_make and xlims_make
updated orderByTree and adding scaling factor to plotLoci
spacerAcqu: pairwise alignment
CLdb_spacerAcquisition: v0.1
spacerAcquisition edits
command->subcommand
arrayBlast sub-subcommand
updated ecoli example: setup
updated ecoli example: arrayBlast
updated ecoli example: database_admin