Add `git fetch` to deploy script.

+ Add `git fetch` to deploy script to prevent issues with local branch
  being ahead of remote branch (actually we don't know if this is an
  issue, but git complains, and this is how we stop it complaining...)
+ Remove some extraneous whitespace.
Restore perfectly safe -fR flags.
Merge pull request #39 from leftclickben/FixDeploy

Restore perfectly safe -fR flags.
Convert deploy-wamcmis to use getopts, and other cleanup.

* Convert ot getopts.
** Note this means the loss of support for long options (--repo-path no longer works, only -r), which I don't think anyone cares about.
** This is consistent with other scripts, including limitations of getopts (no support for -r=/path/to/deploy, must use -r /path/to/deploy).
* Cleanup of error messages.
* Fix whitespace consistency (spaces, not tabs) in usage instructions.
Update usage instructions for deploy-wamcmis.
Update usage instructions for deploy-wamcmis.
Merge pull request #40 from leftclickben/ConvertDeployScriptToGetopts

Convert deploy-wamcmis to use getopts, and other cleanup.
Strip eps_taxonomy list

* This taxonomy is also pretty large and unwieldy so we should strip it
* from the profile as well
change idno of replaced eps taxonomy
Remove geological formation list items

These are handled by an importer so we don't need to maintain these.
Change comment
Merge pull request #42 from kehh/stripGeologicalFormations

Remove geological formation list items
Merge pull request #41 from kehh/stripEpsTaxonomy

Strip eps taxonomy
Text change - rename eps taxonomy
Merge pull request #43 from kehh/renameEpsTaxonomy

Text change - rename eps taxonomy
Merge pull request #44 from leftclickben/AddGitFetchToDeploy

Add `git fetch` to deploy script.