Added BIO to BILOU conversion, BILOUChunkTag, and BILOUChunkDomain
Merged in Factorie/Master
Created Chain Chunker with BILOU encoding for conll 2000.
Merge branch 'master' of https://github.com/factorie/factorie
Commented out currently unused discrete evaluation and incorrectly labeled chunks
Added NP Chunk Mention Finder
Currently testing Different tagging strategies for nested chunks
-TODO: Add deserialize file location option
Merge branch 'master' of https://github.com/factorie/factorie
Added ChunkBasedMentionList to DocumentAnnotatorPipeline
Changed hard coded deserializer for chunker
Split create test data and chunk experiments into two separate objects
improved code for creating test data
Grab only the smallest spans
Changed Tagger to tag BILOU2LayerChunkTags
Span Retriever still retrieves standard BILOUChunkTags
Organized Method order
Split up NP chunk span getting to enable multileveled nested mentions
Remove filterMentions as per Alex
Want to mark all NPs as true mentions
Remove NP filtering for gold mentions
Made NP Chunk Mention Finder Generic for nested and single layer mention finding
Merge branch 'master' of https://github.com/factorie/factorie
Merge branch 'master' of https://github.com/factorie/factorie
Made CRFChunker generic for different chunk tag types
Made LoadConll2000 more generic
Cleaned up a line of MentionAlignment
Remove Varying Debug Line
Remove NPChunkMentionList from Document Annotator
Add possibility of loading different encodings in LoadConll2000
	Since the training data I use for Noun Phrase chunking is no longer the conll 2000 set should this be here?
Made NPChunkMentionFinder Generic
Fixed some bugs in CRFChunker
Removed some Comments and unused lines