Put a reference sequence on the imported variation list
Add a test factory for merged alignment results
Add a by-chromosome filter
Reference build has allosome_names
Make verifyBamIdResult better

-Takes an aligned bam input instead of instrument data
-Get the allosomes from the reference sequence
-Use a method that will always get a vcf file so it works
for older builds as well
Make a software result for the vcf version of the genotype file
Add a build step for verifyBamId
Add verify-bam to somatic validation workflow
Check to see whether genotype data is available
Extract parent class

SomaticValidation::Command::WithMode allows commands to run
in tumor or normal mode.
Run verifyBam in tumor and normal modes
Update define docs
Ignore all diffs for files ending with *.stderr
Additional model is created in test factory
Update test data
VerifyBam command is WithMode
Don't check region_of_interest on the base class
reference instead of reference_sequence_build
Make GenotypeVcf a stageable result
Add verify_bam_id_version to the processing profile