Binaries clean up:
- We decided not to provide standard suites and programs: samtools, bedtool and blast. So the user has to export their path
- We provide the binaries for gemtools-1.7.1-i3, getopt, overlap and pigz.
- Binaries not under the tracking system.
Paths updated according to the new bin directory organization
Makefile:
- Removed the rules to compile the suites and programs.
- No needed since getopt and gemtools provided already compiled and
the others not provided.
Awk scripts clean up