Fixed bug in GATKHC
Merge branch 'develop' of https://github.com/henrikstranneheim/MIP into develop

Conflicts:
	mip.pl
Fixed Bug in GATKReduceReds
Merge branch 'develop' of https://github.com/henrikstranneheim/MIP into develop
GATKHaplotypeCombined
Merge branch 'develop' of https://github.com/henrikstranneheim/MIP into develop
Merge branch 'develop' of https://github.com/henrikstranneheim/MIP into develop

Conflicts:
	mip.pl
Minor changes
Merge branch 'develop' of https://github.com/henrikstranneheim/MIP into develop
Merge branch 'develop' of https://github.com/henrikstranneheim/MIP into develop
Merge branch 'develop' of https://github.com/henrikstranneheim/MIP into develop
Merge branch 'develop' of https://github.com/henrikstranneheim/MIP into develop

Conflicts:
	mip.pl
Merge branch 'develop' of https://github.com/henrikstranneheim/MIP into develop
Merge branch 'develop' of https://github.com/henrikstranneheim/MIP into develop
Minor
Merge branch 'develop' of https://github.com/henrikstranneheim/MIP into develop

Conflicts:
	mip.pl
Merge branch 'develop' of https://github.com/henrikstranneheim/MIP into develop
Merge branch 'develop' of https://github.com/henrikstranneheim/MIP into develop

Conflicts:
	mip.pl
Merge branch 'develop' of https://github.com/henrikstranneheim/MIP into develop
Merge branch 'develop' of https://github.com/henrikstranneheim/MIP into develop