TVB-1371
Throw an exception when console reader does not find a compatible file inside ZIP (except when filed is optional).


git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6217 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1431
Handle bz2 inside a zip in Reader classes for console-defaults.


git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6218 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1344
Rename Connectivity."unidirectional" into "undirected".
Add DB update script for existing datatypes.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6219 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Cleanup:
move sys.setdefaultencoding from several places in TvbProfile.set_profile, as that call needs to be executed first anyway.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6220 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1367
Enhance the existing ProjectionMatrix importers to be able to upload ProjectionMatrices for MEG (previously it was only EEG).

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6224 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Fix demo script after recent move of demo-data.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6249 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Merge branch 'trunk' of https://github.com/the-virtual-brain/tvb-library into trunk
Replace old tvb-documentation link.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6264 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Added get_rotated_volume_slice() and get_volume_shape()
Cleaned from debug code. Ready for pull request
Merge pull request #25 from quiuquio/tsv_vis

we should consider declaring get_volume_slice() asmdeprecated.
Merge branch 'trunk' of https://github.com/the-virtual-brain/tvb-library into trunk
Merge branch 'trunk' of https://github.com/the-virtual-brain/tvb-library into trunk

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6265 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1477: unit test fro surface simulations with and without subcortical structures

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6267 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1303: support connectivities with subcortical structures for surface simulations

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6268 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
TVB-1479: rename default region mapping according to changes in previous commit

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6270 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Fix test after recent code-changes.


git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6271 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
Merge branch 'trunk' of https://github.com/the-virtual-brain/tvb-library into trunk
TVB-1469
Remove deprecated field NOSE_CORRECTION on Connectivity.
Data should come already rotated and in the same space for all surfaces/conn.

git-svn-id: https://repo.thevirtualbrain.org/svn/tvb/trunk/scientific_library@6275 1c0e02f0-7929-43c0-8fb3-3293bf43b0d1
correct equations scientific, pulse train for simple vectors