Added lines to comfirm completion of operation
Added samtools flagstats
Added samtools flagstats
Increase time allocation
Creation of hg19 reference file and concomitant changes to b37 reference file
New ad hoc script. Used to remove /3 added to read names in older bams prior to reprocessing. Working.
Little hack as the idxstat script doesnt like the index names produced by Picard
Added an extra modification. Increased time allocation.
Fixed remove conmmand