infer compression type from from file name suffix
- classifier produces minimal output with mocked-up names
- reorganize command line options
- add test files for classifier
minimal tests for classifier subcommand
filter < min_percent hits
removing hdf5 test cases for now.  They will be stored in the git history.
moving this into teh classifier folder
compound_assignment function for new classifier
moving the sequtil apply functions to test_sequtils
new condense_assignment apply function
adding write pickle function
full taxonomic copy number corrections from rdp 11_2
new copy_number_correction apply function
moving this down a directory for accessability
removed the copy number filler.  The copy number correction file will contain all copy number corrections
adding some no blast hit items
small logic error
removed a couple hits to items that have changed in the latest rdp
correctly reports assignments, reads, freqs, and clusters with optional details output
renaming condense_taxonomy to condense_ids and simply returning a dictionary of the previous rank and new rank
some count info output plus blast hit percent info