removed read.sensitivity / read.ensemble files from utils (these were moved to PEcAn.uncertainty in recent commit); removed obsolete contents of /utils/inst/tests/test (old pecan.xml and two empty folders).
updated units for water conductivity in trait.dictionary.csv
It was difficult to figure out what 'get.run.id' was doing so I simplified it wrote tests. The output should be the same as before although I may not have covered all uses. I suspect it doesn't matter how the values are combined, just that they are combined.
updated documentation for read.output function
added .Rproj.user to .gitignore
removed obsolete tests; 1) test.bety.deprecation: bety remains as default database name and other references have been removed 2) test.write.config.utils tests were not useful and referred to functions that have been moved to uncertainty module
fixed tests and updated documentation causing previous build to break
testing to see if I can install a dependency on the build machine through the "run.all.R", but to fix recent broken build and to test potential security hole; refs #1547
testing to see if I can install a dependency on the build machine through the "run.all.R", but to fix recent broken build and to test potential security hole; refs #1547
Merge branch 'master' of https://github.com/PecanProject/pecan
Merge branch 'master' of https://github.com/PecanProject/pecan
Merge branch 'master' of https://github.com/PecanProject/pecan
renamed "EnCro" to "BioCro" for generality
added ma.model figure (updated version of fig 3 in lebauer et al) to meta.analysis module (in inst/)
moved ncdf dependency in sipnet module to "Depends" field in DESCRIPTION
misc. updates while working on model2netcdf.BIOCRO
renamed log.* to logger.*
redid logger
added `require(PEcAn.ED)` to the top of test.model2netcdf.ED2.R; this is redundant with `library(PEcAn.ED)` in `models/ed/tests/run.all.R` and should not be required, but hopefully this will prevent broken builds.
Merge branch 'master' of https://github.com/PecanProject/pecan