tentative - working?
added gz parsing
changed back filter-exact file
added saturation script get-occupancy.py
merged mrna branch
added temp change to get-occupied.py
ignore CONNECTED_THRESHOLD if 0
fixed minimum density foo
removed annoying printout
fixed counting bug in consume_fasta_and_tag
changed get-occupied.py again
add last kmer in sequence for tagging/threading
removed surrender code
fixed tests for new sequence tagging scheme
simple pipeline test
added output to graph-size-py.py
added test data and test for graph-size-py
updated graph size tests and output
debugging changes
added filter-if-present