bug 24050 - remove all pip related conditionals from the master Makefile
pbcore/GenomicConsensus/kineticsTools/pbaha/pbalign/pbbarcode/pbh5tools/pbsamtools

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 130184]
bug 24050 - refactoring regarding pip-install

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 130546]
bug 24050 - bad idea to redirect fd in Makefile, not robust.

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 130550]
bug #24636 Removed FormatFloat override for CSV output.  Floats now rounded to 4 places in CSV.

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 130829]
bug #24636  Added features to cmph5tools: MapQV, WhiteList, AverageBarcodeScore

Added tests to stats.t for new features in cmph5tools, MapQV and WhiteList

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 130897]
bug #24636 Updated docs.  Included jbullard examples from example-slides.html in rst docs.

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 131026]
bug #24636 Update cram tests to be more readable

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 131027]
bug 23997 fixed output

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 131060]
Fix cram test (portable)

[Tracking bug 23893]

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 131069]
Temporarily disable ReadLength test

[Tracking bug 23893]

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 131088]
   Bug 24663. Fix pbh5tools cram test by replacing head with sed.	

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 131097]
   Bug 24663. Turn ReadLength test back on, reverting change 131088.

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 131100]
       Fix bioinformatics tests (pbcore.data API change)

       [Tracking bug 23893]

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 131143]
   Bug 23997. Change head to sed to fix problem on CentOS.

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 131197]
bug 24676 Fixed issue with 'cmph5tools.py sort --outFile' throwing error when copying /AlnInfo/Barcode 
dataset attributes into new sorted file.  

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 131342]
bug 24676 Added --limit option to cmph5tools.py stats to limit returned records.  Limit applied to each group in query.
updated cram tests to use --limit instead of sed-chopping result.

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 131380]
Remove cmp.h5 files which have no alignments from merge list. 
bug 24730

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/pbh5tools/": change = 131641]