Merge pull request #121 from SeqWare/feature/SEQWARE-1757

Reduce unhelpful messaging.

Former-commit-id: fc9ccb994036036f8eb79f74fcf72a18dc7f05b2
Moving files around, updated README


Former-commit-id: 51e1303be7e7f096a780faa51c218105549e500d
Add --host option to propagate-statuses. Skip host check in WorkflowStatusChecker when workflow-runs are specified.

Former-commit-id: 373116fc39cd19e2406c4f21da02381e0b72b7bb
Fix stupid byte-order mark issue and some progress on workflow run conventions checking


Former-commit-id: f0bef73913fa268b5b38c18386562ae6939d69d9
Archiving Morgan's useful DB diagrams


Former-commit-id: c0abba376e1c289abc75eb042f9cda05f78a01dd
Merge pull request #122 from SeqWare/feature/status-host

Add --host option to propagate-statuses. Skip host check in WorkflowStat...

Former-commit-id: c03cb5ff0e8422f63860942ef70110120fff90df
Fix typo in doc.

Former-commit-id: dee0db33cc22bd51b42cbcbd596ce61255df1708
Initial work on Samplehierarchy


Former-commit-id: f02987dc396a3f7b64a8881a8c7fe975794f081a
Update docs and tweak new CLI.

Former-commit-id: 14df404285cbd672171be8a0da707a4b2ab58abf
Update new CLI: bundle test applies to entire bundle or specified workflow, always uses 'test' node value from metadata.xml.  bundle dry-run and bundle launch allow for fully specified launching (i.e., not using the 'test' node value).

Former-commit-id: 2eff781196e5f0f5b16e2a7c553a349ee4f8dd88
Comment archetype-catalog.xml with brief usage instructions.

Former-commit-id: 51b7dcdf987339d3e13dbdd930d2a50b4819cd02
Add bundle validation immediately prior to packaging.

Former-commit-id: 49c40459ff495b6cb9c477786a1a818a8bfaa98b
Remove `bundle test` entirely.  `bundle dry-run` and `bundle launch` are sufficient and less complex.

Former-commit-id: 226dea00c58eb1534f6df735aee3c601408fca2a
Functions to obtain bundle info.

Former-commit-id: 5740aa355077bc3788cf1725573b90afd0e5c2bc
Make ini optional for `bundle dry-run` and `bundle launch`, defaulting to the config value defined in metadata.xml.

Former-commit-id: 75eee05e437939c8491d75db0759591530be1046
Sample hierarchy and duplicate attribute keys


Former-commit-id: a0ae88e95b14d24ee19f0487b713486c3bb81164
Functions to obtain the config path.

Former-commit-id: 58dfeaab3832f0b4a45480af58c43c43a6178955
Update docs to reflect new testing commands.

Former-commit-id: e86b1a2144c35ee5757c27e945972a9665561178
Clarify how default engine is picked.

Former-commit-id: b44fa1649eab54c38c3fbaff43967af2679426fa
Add better messaging to oozie --wait, and return non-zero exit code when run fails.

Former-commit-id: ab25f28b31107f95552587e898ea1b6454cfeb30