Created install_GSC_patches on vcr.py and modified custom.yaml to accept it.
Merge branch 'master' of github.com:JCVI-Cloud/cloudbiolinux
Updating vcr.py for latest VIGOR tarball
Corrected syntax errors in sudo commands under install_GSC_patches.
Renaming install_GSC_patches to install_gsc_patches
Renaming GSC_patches to gsc_patches
Added install_vicvb.
Added vicvb
apt-get install of libperlio-gzip-perl and liblocal-lib-perl
Replaced install_gsc_patches with install_galaxy_vcr. Also change owner of galaxy vcr to galaxy, removing need to change sudoers.
changed gsc_patches to galaxy_vcr.
Added wrong file in previous update. This is the right file.
Unforseen debugging for echo, file IO, and sed when running under fabric
Modified install_galaxy_vcr to add sanitize_all_html in [app:main] section of universe_wsgi.ini. Also removed deprecated function _add_tarball.
Merge branch 'master' of git://github.com/chapmanb/cloudbiolinux
Merge branch 'master' of github.com:JCVI-Cloud/cloudbiolinux
Changed _initialize_env.SCRATCH_DIR to _initialize_env.VIGOR_SCRATCH_DIR to avoid changing /usr/local/scratch (which other programs use). Removed all unused, vigor-cleanup functions.
Adding vicvb_cleanall
Added function install_vicvb_cleanall. Function install_vicvb downloads and installs latest tbl2asn.
Merge branch 'master' of git://github.com/chapmanb/cloudbiolinux