Merge transmart/master into thehyve/master
New RNASeq group test advanced analysis
add js file for GroupTestRNASeq
Add additional custom width for input fields. FT-361 Create UI for RNASeq analysis job (input and analysis results)
replace deprecated ConfigurationHolder with injecting grailsApplication
enable RNASeqgroupTest in analysis job result to be opened - FT-361 Create UI for RNASeq analysis job (input and analysis results)
fix FT-426 Download Link is not working for completed analysis
fix FT-426 Download Link is not working for completed analysis

Conflicts:
	grails-app/controllers/com/recomdata/transmart/data/association/RNASeqgroupTestController.groovy
	grails-app/controllers/com/recomdata/transmart/data/association/aCGHgroupTestController.groovy
fix FT-426 Download Link is not working for completed analysis
fix FT-426 Download Link is not working for completed analysis

Conflicts:
	grails-app/controllers/com/recomdata/transmart/data/association/RNASeqgroupTestController.groovy
Fix FT-426 Download Link is not working for completed analysis - Config changes has caused output gsp and controller to be fixed. this fix to be applied to another existing analysis.
Fix FT-426 Download Link is not working for completed analysis - Applied fixes to output gsp to the rest of existing analysis
Merge branch 'master' into RNASeq
Apply major fixes from master branch
Fix typos "imageLocation" should be "imageLocations"
Merge branch 'master' into RNASeq
additions for differential expression analysis of RNASeq gene expression profiles
Merge branch 'RNASeq' of https://github.com/thehyve/Rmodules into RNASeq
Solution for TraIT FoundationTeam FT477 issue: Made order of patients in phenodata file (rows) consistent with order in regions file (columns)
Solution for TraIT FoundationTeam FT477 issue: Made order of patients in phenodata file (rows) consistent with order in regions file (columns)
[FT-220] Update job status in DB from RModulesJobService