fix link errors that happened when I turned on InfovisParallel

Still many comp warnings and several failed tests remain. Lacking
users, I will deprecate this module rather than fix them.

Change-Id: I4cf58bb1c769ba5fe10b135f3899cd6865c2b9b8
deprecate this module

It doesn't appear to have been compiled since at least 6.0, and it
needs more time than we have to fully fix the issues that are now
showing in it.

Change-Id: I5499518f68e32572b5344691ee0fcb4a9b29a6b5
Fix the way point and cell data arrays are marked for reading.

The point and cell arrays were being enabled/disabled after they
were supposed to which resulted in potentially having the wrong
arrays read in.

Change-Id: Ic0435bcf6447260fe76ddc32b47719d7262fca44
add option to write XML to string instead of file

This commit enables vtkXMLWriter and its subclasses to write
their output to a string instead of a file.

Change-Id: Idff93039f9536379e3ef9abad6ea4ce18b4f2a60
fix failing tests revealed by gerrit

subclasses of vtkXMLWriter should now call OpenStream & CloseStream
as opposed to OpenFile & CloseFile.

Change-Id: I39ccdc711d07e96763fc941b5fcd80b1da6b38c5
Merge topic 'update-vtk' into pv-master

7fe4ffb4 Merge topic 'empty-array-init' into master
4f1b4a13 Merge topic 'web-catalyst-composite-widget' into master
3bb60f29 better UI for catalyst re-sampler web widget
b6700dfb Better composite catalyst web widget
398af669 Merge topic 'vtk-surface-reconstruction-fix-origin-and-spacing' into master
90d75926 Handle empty array initialization in numpy_support.
618d6279 Merge topic 'vtkCellLocator-precision-issue' into master
9fc4c29d Merge topic 'Coverage_ParametricSpline' into master
5565b59b Merge topic 'phyloxml_tree_writer' into master
4b3de93f Merge remote-tracking branch 'pvvtk/pv-master' into HEAD
e2b5f16b ENH: Unit test for ParametricSpline
5a894ac2 Merge topic 'RemoveBogusLineInfo' into master
42415809 COMP: Remove bogus line info from generated files
c71d9c21 get the baseline file's path from the command line
81534288 add baseline directory
bba7656c improve the thoroughness of TestPhyloXMLTreeWriter
...
Merge remote-tracking branch 'pvvtk/pv-master' into HEAD

* pvvtk/pv-master:

Change-Id: I4b2d5f7089cb5e4d29453cfd97163a5aff0eb75a
ENH: Improve code coverage for UnicodeStringArray

Added tests to TestUnicodeStringArrayAPI, bringing coverage from 24%
to 100%.

Change-Id: I48b36bc47090a2966262e2dfd1bb5375024ca078
BUG: fix xdmf test failure

A test failure was introduced by the commit "BUG: fix some xdmf writer crashes".
This new patch reverts the change which caused the failure.

Change-Id: Ifbb3a68b14f0c5a5cd390fc68d9a50668ca60ac8
BUG: VTK_JAVA_SOURCE_VERSION to accomodate different java versions

The variable can be set to the JDK version installed on the
machine to link against. Default is 1.5 to maintain backwards
compatibility for binary packages.

Change-Id: I4f721c5f8fcf6666971418ee97862d6ae905352b
Re-enabling tests disabled during modularization for Interaction/Widgets

Fixed dependencies and added baseline

Change-Id: I6621bd523e8811568416a2c1d4e9279b8a6a4f27
Merge topic 'COVERAGE_InteractionWidgets' into master

942444bf Re-enabling tests disabled during modularization for Interaction/Widgets
Merge topic 'Coverage_UnicodeStringArray' into master

94a63119 ENH: Improve code coverage for UnicodeStringArray
Merge topic 'write_xml_to_string' into master

e90c46ae fix failing tests revealed by gerrit
52d62550 add option to write XML to string instead of file
fix the format of PhyloXML references

The PhyloXML specification indicates that references should
match the following regular expression pattern:

[a-zA-Z0-9_]+:[a-zA-Z0-9_\.\-\s]+

In order to do so, we now prepend "VTK:" to the beginning of the
array name.

Change-Id: Ie898e19dc10ec6edd2b67a5b493f55521e15c63d
Merge topic 'phyloxml_reference_format' into master

183bb5d7 fix the format of PhyloXML references
Merge topic 'IntroduceNewBoxAndBagPlots' into pv-master

957dddda Merge topic 'FixBlackBoxPlot' into master
01bade26 Merge topic 'Segfault_PlotBox' into master
23d97ae3 Fix black box plots issue.
b3470426 BUG: CreateDefaultLookupTable crashes if Input is NULL.
dd6ee504 Merge topic 'FixBagPlotLegend' into master
e0911e4c Fix bag plot legends.
af6d034e Merge topic 'EnhanceBagPlot' into master
39efc956 Enhance bag plot API to allow specify line and points properties.
e83fc65f Merge topic 'vtkweb-improvement' into master
a8f89050 Fix vtkweb catalyst css
1caadcd1 Merge topic 'vtkweb-error-handling' into master
fa652b66 Add error function to vtk:mouseInteraction RPC
0c34a2e4 Merge topic 'Coverage_MultiThreshold' into master
f3311d5c ENH: Coverage for MultiThreshold.
fb15ddf3 Merge topic 'vtkweb-improvement' into master
c3957363 Various VTK-web improvement
...
Merge remote-tracking branch 'pvvtk/pv-master' into HEAD

* pvvtk/pv-master:

Change-Id: I11707e2726d181c1041f02fc3366b67c55d03588
Merge topic 'MPASReader_data_arrays' into master

bde18864 Fix the way point and cell data arrays are marked for reading.
Merge topic 'fix-infovis-parallel-mpi-link' into master

17804f38 deprecate this module
039d1d9d fix link errors that happened when I turned on InfovisParallel